BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:4.0 nTPM
HPA:4.0 nTPM
GTEx:8.1 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:0.4 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038440
Glial cells High
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.2
2289 Male, age 61, right hemisphere 7.9
2846 Female, age 79, unknown 0.6
2290 Female, age 72, unknown 0.4
1781 Male, age 74, unknown 0.3
2288 Male, age 75, left hemisphere 0.1
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 0.1
2196 Female, age 79, unknown 0.6
1956 Male, age 74, unknown 0.2
2491 Male, age 75, both hemispheres 0.2
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.6
2772 Female, age 79, unknown 0.9
2395 Male, age 75, both hemispheres 0.7
2646 Male, age 61, right hemisphere 0.7
2567 Female, age 72, unknown 0.6
1996 Male, age 80, right hemisphere 0.1
Globus pallidus, internus
nTPM: 0.5
2778 Female, age 91, both hemispheres 1.0
2111 Female, age 85, right hemisphere 0.6
2037 Male, age 80, right hemisphere 0.5
2287 Male, age 75, right hemisphere 0.5
1818 Male, age 74, unknown 0.3
2566 Female, age 72, unknown 0.3
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 2.0
2732 Male, age 80, right hemisphere 15.5
1783 Male, age 74, unknown 0.2
2698 Female, age 72, unknown 0.2
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.1
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2821 Male, age 75, both hemispheres 0.4
2393 Male, age 80, right hemisphere 0.3
2484 Female, age 94, left hemisphere 0.1
2569 Male, age 61, both hemispheres 0.1
Nucleus of the diagonal band
nTPM: 1.6
1979 Male, age 74, unknown 5.8
1812 Female, age 91, both hemispheres 0.7
2775 Male, age 80, right hemisphere 0.5
2029 Male, age 61, right hemisphere 0.4
2195 Female, age 85, both hemispheres 0.4
Olfactory tubercle
nTPM: 0.2
1846 Male, age 80, right hemisphere 0.3
2487 Female, age 94, left hemisphere 0.2
2856 Male, age 75, right hemisphere 0.2
1998 Female, age 91, both hemispheres 0.1
Putamen
nTPM: 0.2
2466 Female, age 79, unknown 0.7
2647 Male, age 75, left hemisphere 0.3
1829 Male, age 74, unknown 0.2
1937 Female, age 91, right hemisphere 0.1
2489 Female, age 72, unknown 0.1
1838 Male, age 80, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 4.0
2199 Male, age 80, right hemisphere 11.4
2009 Female, age 91, both hemispheres 8.4
2629 Female, age 94, right hemisphere 7.3
1960 Male, age 74, unknown 0.2
2059 Female, age 85, both hemispheres 0.2
2031 Female, age 72, unknown 0.1
2394 Male, age 61, left hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 8.1
Samples: 246

Max nTPM: 98.5
Min nTPM: 0.0
Std nTPM: 17.1
Median nTPM: 0.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 98.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 93.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 88.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 82.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 75.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 72.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 68.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 66.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 65.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 64.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 47.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 119.1
Min nTPM: 0.0
Std nTPM: 14.7
Median nTPM: 0.2
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 119.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 107.9
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 76.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 65.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 63.1
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 62.7
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 55.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 52.1
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 51.7
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 36.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 33.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.3
Samples: 205

Max nTPM: 8.5
Min nTPM: 0.0
Std nTPM: 0.6
Median nTPM: 0.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 8.5
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 3.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 1.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 1.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 0.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 0.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 0.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 0.7
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 0.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 0.6
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 0.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.2
FF:10164-103B2 76 years, female 15.2
Globus pallidus
Scaled Tags Per Million: 2.8
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 2.5
Nucleus accumbens
Scaled Tags Per Million: 6.6
FF:10037-101F1 23-56 years, mixed 6.6
Putamen
Scaled Tags Per Million: 0.2
FF:10176-103C5 60 years, female 0.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Caudate
nTPM: 3.1
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.5
Sample A Female 4.2
Sample B Female 3.5
Sample C Male 3.2
Sample D Male 1.5
Putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 0.3
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 6.0
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.7
Sample C Male 1.5
Sample D Male 6.0
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.3
Sample C Male 0.1
Sample D Male 1.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.5
Sample B Male 0.6
Sample C Female 0.6
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69114878 Antisense, RP_050317_02_C04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69114878 Antisense, RP_050317_02_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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