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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Neuronal projections: Medium
Synapses: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
73.211
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.2 nTPM
HPA:135.2 nTPM
GTEx:159.0 nTPM
FANTOM5:1599.4 Scaled Tags Per Million
Pig:483.7 nTPM
Mouse:639.0 nTPM
Allen mouse:18.8 Expression energy

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA008273
Glial cells Not detected
Neuronal cells High
Neuronal projections Medium
Synapses Medium

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA008273Antibody HPA012828Antibody CAB001984
Glial cells Not detectedNot detectedNot detected
Neuronal cells HighMediumMedium






HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA012828
Hippocampal formation mean intensity 73.211
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 29.728
Molecular layer of the dentate gyrus 26.627
Granular dentate gyrus 11.263
CA1 - oriens layer 39.920
CA1 - pyramidal layer 26.421
CA1 - radiatum layer 32.974
CA2 - oriens layer 64.300
CA2 - pyramidal layer 46.359
CA2 - radiatum layer 50.648
CA3 - oriens layer 63.516
CA3 - pyramidal layer 33.410
CA3 - radiatum layer 52.769
Stratum lucidum 27.688
Lacunosum moleculare 41.258
Subiculum 73.211

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 135.2
Sample id Sample description nTPM
Hippocampus
nTPM: 65.7
2621 Female, age 67, right hemisphere 133.4
1898 Male, age 80, left hemisphere 115.0
2148 Female, age 91, left hemisphere 70.7
1855 Male, age 76, left hemisphere 53.7
1911 Female, age 85, right hemisphere 21.4
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 70.2
1927 Female, age 91, both hemispheres 194.3
2246 Female, age 85, both hemispheres 75.5
2531 Female, age 67, both hemispheres 67.0
2010 Male, age 76, both hemispheres 47.5
2530 Female, age 94, left hemisphere 27.6
2528 Male, age 74, both hemispheres 9.3
Entorhinal gyrus
nTPM: 55.3
2613 Female, age 94, left hemisphere 111.6
1938 Female, age 85, left hemisphere 101.7
2764 Male, age 80, right hemisphere 54.5
2686 Male, age 75, right hemisphere 34.3
1787 Male, age 76, left hemisphere 29.8
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 118.6
2749 Male, age 80, left hemisphere 243.1
2527 Male, age 74, both hemispheres 144.3
1873 Female, age 85, both hemispheres 79.4
2082 Female, age 91, right hemisphere 68.3
2045 Male, age 76, both hemispheres 57.9
Hippocampus, CA2
nTPM: 72.5
1963 Male, age 80, left hemisphere 210.8
1892 Male, age 76, both hemispheres 114.3
2249 Male, age 74, both hemispheres 40.4
2113 Female, age 91, right hemisphere 37.8
2437 Female, age 94, left hemisphere 26.3
1940 Female, age 85, left hemisphere 5.6
Hippocampus, CA3
nTPM: 86.8
2137 Male, age 80, left hemisphere 213.9
2620 Female, age 94, left hemisphere 100.2
2861 Female, age 67, both hemispheres 79.6
2436 Male, age 74, both hemispheres 58.1
1867 Male, age 76, both hemispheres 47.2
1891 Female, age 85, both hemispheres 21.7
Parahippocampal cortex
nTPM: 70.3
2245 Female, age 91, both hemispheres 174.9
2250 Female, age 67, right hemisphere 113.2
1850 Male, age 80, both hemispheres 109.5
1990 Female, age 91, right hemisphere 80.3
1933 Female, age 85, both hemispheres 77.3
2693 Female, age 94, both hemispheres 71.1
2532 Female, age 72, left hemisphere 32.0
2622 Female, age 67, right hemisphere 31.3
2018 Male, age 76, both hemispheres 8.6
2692 Male, age 74, both hemispheres 4.6
Perirhinal gyrus
nTPM: 135.2
1847 Female, age 91, left hemisphere 266.2
2521 Female, age 94, right hemisphere 147.6
1841 Female, age 85, right hemisphere 107.4
1794 Male, age 80, right hemisphere 104.6
2848 Male, age 76, right hemisphere 50.2
Subiculum
nTPM: 29.1
1901 Male, age 80, both hemispheres 62.1
1977 Female, age 85, both hemispheres 58.5
2438 Female, age 94, left hemisphere 39.0
2619 Male, age 74, both hemispheres 14.9
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 159.0
Samples: 197

Max nTPM: 555.7
Min nTPM: 11.5
Std nTPM: 109.8
Median nTPM: 147.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 555.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 524.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 457.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 457.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 417.1
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 412.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 412.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 404.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 380.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 379.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 368.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 330.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 329.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 328.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 328.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 325.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 325.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 320.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 319.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 308.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 306.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 305.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 300.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 298.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 295.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 293.6
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 291.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 278.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 277.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 276.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 275.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 273.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 264.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 263.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 260.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 256.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 255.9
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 248.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 247.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 246.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 246.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 245.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 240.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 235.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 233.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 232.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 228.6
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 224.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 223.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 222.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 219.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 218.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 214.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 214.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 211.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 210.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 208.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 206.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 202.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 202.7
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 201.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 200.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 198.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 196.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 193.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 193.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 190.5
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 188.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 187.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 187.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 186.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 185.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 185.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 179.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 178.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 177.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 177.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 177.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 174.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 172.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 171.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 166.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 165.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 164.6
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 162.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 162.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 160.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 160.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 158.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 154.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 151.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 151.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 148.9
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 148.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 148.6
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 148.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 148.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 147.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 147.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 145.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 134.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 133.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 133.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 132.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 131.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 130.8
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 129.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 126.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 126.0
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 121.8
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 121.5
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 121.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 119.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 115.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 114.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 113.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 111.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 110.4
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 107.7
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 107.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 106.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 106.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 105.7
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 99.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 99.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 98.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 98.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 98.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 95.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 95.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 94.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 91.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 89.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 87.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 87.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 87.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 85.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 79.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 77.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 77.0
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 74.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 74.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 72.8
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 72.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 72.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 72.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 71.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 70.4
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 67.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 64.3
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 63.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 63.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 62.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 62.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 62.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 60.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 59.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 58.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 54.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 52.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 52.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 51.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 51.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 44.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 43.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 43.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 43.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 42.6
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 41.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 39.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 39.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 38.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 36.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 35.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 35.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 34.9
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 34.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 34.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 33.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 32.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 32.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 29.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 29.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 28.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 28.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 26.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 25.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 25.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 24.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 23.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 20.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 18.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 17.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 13.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 11.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1599.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1599.4
FF:10169-103B7 60 years, female 2327.0
FF:10153-102I9 76 years, female 871.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 483.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 386.2
Samples: 4

Max nTPM: 439.0
Min nTPM: 336.9
Sample A Female 439.0
Sample B Female 378.7
Sample C Male 390.1
Sample D Male 336.9
Entorhinal cortex
nTPM: 420.5
Samples: 4

Max nTPM: 434.5
Min nTPM: 400.8
Sample A Female 430.0
Sample B Female 434.5
Sample C Male 400.8
Sample D Male 416.6
Subiculum
nTPM: 483.7
Samples: 4

Max nTPM: 645.7
Min nTPM: 379.9
Sample A Female 645.7
Sample B Female 443.7
Sample C Male 465.5
Sample D Male 379.9
Ventral hippocampus
nTPM: 407.1
Samples: 4

Max nTPM: 442.1
Min nTPM: 357.0
Sample A Female 391.3
Sample B Female 357.0
Sample C Male 442.1
Sample D Male 438.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 639.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 639.0
Samples: 4

Max nTPM: 693.0
Min nTPM: 581.0
Sample A Male 633.1
Sample B Male 581.0
Sample C Female 648.8
Sample D Female 693.0
Hippocampal formation
nTPM: 501.1
Samples: 4

Max nTPM: 574.7
Min nTPM: 446.9
Sample A Male 574.7
Sample B Male 509.4
Sample C Female 446.9
Sample D Female 473.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.8
74272037 Antisense, RP_060202_01_A04, Mouse strain C57BL/6J (56 days, male) 20.4
69549641 Antisense, RP_050309_02_D02, Mouse strain C57BL/6J (56 days, male) 17.3

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