MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:79.2 nTPM
HPA:79.2 nTPM
GTEx:38.5 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:14.2 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.1
2019 Male, age 18, unknown 82.5
1830 Male, age 51, unknown 74.6
2666 Male, age 74, left hemisphere 69.3
1870 Female, age 42, unknown 60.5
2828 Female, age 72, unknown 60.5
2586 Male, age 75, left hemisphere 59.7
1833 Male, age 53, unknown 59.2
2411 Female, age 72, unknown 54.2
2219 Male, age 76, both hemispheres 37.1
1827 Male, age 72, unknown 33.0
Dorsal raphe nucleus
nTPM: 64.9
1828 Male, age 53, unknown 94.2
2047 Male, age 72, unknown 85.0
2750 Male, age 76, both hemispheres 66.2
2016 Female, age 72, unknown 45.8
2298 Female, age 72, unknown 33.3
Inferior colliculus
nTPM: 37.1
1890 Male, age 53, unknown 50.9
1848 Female, age 42, unknown 37.5
2849 Male, age 72, unknown 36.7
2097 Female, age 72, unknown 23.5
Median raphe nucleus
nTPM: 57.9
2220 Male, age 76, midline 57.9
Pedunculopontine tegmental nucleus
nTPM: 46.5
2338 Male, age 61, both hemispheres 55.9
2334 Male, age 80, both hemispheres 48.4
1921 Female, age 85, both hemispheres 35.2
Periaquaductal grey, anterior
nTPM: 37.2
2502 Female, age 75, unknown 42.8
1795 Male, age 51, unknown 36.2
1947 Male, age 18, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 36.5
2850 Male, age 76, both hemispheres 46.1
2464 Female, age 72, unknown 42.3
1831 Male, age 72, unknown 33.4
1840 Male, age 53, unknown 24.2
Periaquaductal grey, lateral
nTPM: 47.2
2140 Male, age 76, both hemispheres 58.4
2053 Male, age 18, unknown 45.9
2272 Male, age 74, both hemispheres 37.5
Pretectal area
nTPM: 38.1
2316 Male, age 76, right hemisphere 54.8
2667 Female, age 75, unknown 44.9
1817 Female, age 42, unknown 44.8
2407 Male, age 75, both hemispheres 40.8
1815 Male, age 53, unknown 40.7
1944 Female, age 72, unknown 38.0
2007 Male, age 72, unknown 37.2
2825 Male, age 18, unknown 33.5
2224 Female, age 72, unknown 31.4
2273 Male, age 74, both hemispheres 30.3
1816 Male, age 51, unknown 23.1
Red nucleus
nTPM: 79.2
2588 Male, age 74, left hemisphere 96.2
1865 Male, age 51, unknown 94.8
2823 Male, age 76, right hemisphere 89.9
2227 Male, age 72, unknown 87.4
1904 Male, age 53, unknown 87.2
2769 Male, age 72, unknown 86.3
2785 Male, age 18, unknown 80.2
2503 Female, age 72, unknown 77.7
2584 Male, age 75, left hemisphere 69.1
1821 Female, age 72, unknown 65.2
1954 Female, age 42, unknown 62.1
2725 Female, age 75, unknown 54.7
Substantia nigra
nTPM: 71.1
2699 Male, age 18, unknown 95.5
2665 Male, age 74, both hemispheres 83.3
1851 Male, age 51, unknown 78.5
1916 Female, age 42, unknown 74.9
2409 Female, age 72, unknown 72.8
2583 Male, age 75, right hemisphere 72.0
2590 Female, age 75, unknown 64.5
1941 Male, age 53, unknown 60.2
2241 Male, age 72, unknown 59.1
1889 Female, age 72, unknown 50.1
Superior colliculus
nTPM: 46.9
1913 Female, age 42, unknown 71.7
1995 Male, age 72, unknown 55.7
2668 Female, age 75, unknown 53.6
2587 Male, age 74, left hemisphere 49.6
2664 Male, age 75, both hemispheres 47.2
1839 Male, age 51, unknown 46.3
2087 Female, age 72, unknown 43.2
1895 Male, age 76, right hemisphere 41.4
1796 Male, age 53, unknown 34.3
2261 Male, age 18, unknown 26.1
Ventral tegmental area
nTPM: 74.3
2223 Female, age 72, unknown 128.8
2410 Female, age 72, unknown 71.6
2218 Male, age 76, both hemispheres 68.6
1942 Male, age 51, unknown 60.4
1915 Female, age 42, unknown 59.8
2021 Male, age 53, unknown 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 88.7
Min nTPM: 14.1
Std nTPM: 12.8
Median nTPM: 35.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 88.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 85.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 70.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 69.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 68.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 66.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 63.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 59.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 58.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 56.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.9
FF:10158-103A5 76 years, female 132.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.7
Pig sample Sample description nTPM
Midbrain
nTPM: 34.2
Samples: 4

Max nTPM: 56.2
Min nTPM: 23.0
Sample A Female 56.2
Sample B Female 28.9
Sample C Male 28.6
Sample D Male 23.0
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 23.2
Min nTPM: 20.2
Sample B Female 23.2
Sample C Male 22.0
Sample D Male 20.2
Substantia nigra
nTPM: 48.4
Samples: 4

Max nTPM: 84.8
Min nTPM: 30.5
Sample A Female 34.4
Sample B Female 84.8
Sample C Male 30.5
Sample D Male 43.7
Superior colliculi
nTPM: 51.7
Samples: 4

Max nTPM: 88.4
Min nTPM: 33.0
Sample A Female 47.4
Sample B Female 88.4
Sample C Male 33.0
Sample D Male 37.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.5
Sample A Male 14.5
Sample B Male 14.4
Sample C Female 13.5
Sample D Female 14.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71023014 Antisense, RP_050719_02_B05, Mouse strain C57BL/6J (56 days, male) 0.7
73512354 Antisense, RP_050719_02_B05, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.