MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.6 nTPM
HPA:32.6 nTPM
GTEx:46.0 nTPM
FANTOM5:52.3 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:93.5 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.4
2019 Male, age 18, unknown 32.9
2411 Female, age 72, unknown 32.4
1870 Female, age 42, unknown 31.8
1827 Male, age 72, unknown 31.1
2666 Male, age 74, left hemisphere 30.0
2219 Male, age 76, both hemispheres 29.8
1833 Male, age 53, unknown 29.7
2828 Female, age 72, unknown 29.3
1830 Male, age 51, unknown 28.9
2586 Male, age 75, left hemisphere 27.6
Dorsal raphe nucleus
nTPM: 31.3
2298 Female, age 72, unknown 36.3
1828 Male, age 53, unknown 31.4
2750 Male, age 76, both hemispheres 31.0
2047 Male, age 72, unknown 30.2
2016 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 31.7
2097 Female, age 72, unknown 35.4
1848 Female, age 42, unknown 30.9
1890 Male, age 53, unknown 30.8
2849 Male, age 72, unknown 29.8
Median raphe nucleus
nTPM: 31.8
2220 Male, age 76, midline 31.8
Pedunculopontine tegmental nucleus
nTPM: 31.3
2334 Male, age 80, both hemispheres 32.3
1921 Female, age 85, both hemispheres 31.3
2338 Male, age 61, both hemispheres 30.4
Periaquaductal grey, anterior
nTPM: 30.9
2502 Female, age 75, unknown 32.6
1947 Male, age 18, unknown 30.9
1795 Male, age 51, unknown 29.3
Periaquaductal grey, dorsal
nTPM: 28.9
1840 Male, age 53, unknown 30.5
1831 Male, age 72, unknown 28.8
2850 Male, age 76, both hemispheres 28.3
2464 Female, age 72, unknown 28.0
Periaquaductal grey, lateral
nTPM: 28.1
2272 Male, age 74, both hemispheres 29.2
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 26.9
Pretectal area
nTPM: 31.8
1944 Female, age 72, unknown 35.4
1817 Female, age 42, unknown 35.3
1816 Male, age 51, unknown 34.9
2007 Male, age 72, unknown 34.8
1815 Male, age 53, unknown 32.5
2224 Female, age 72, unknown 31.2
2667 Female, age 75, unknown 30.9
2273 Male, age 74, both hemispheres 29.5
2825 Male, age 18, unknown 29.0
2407 Male, age 75, both hemispheres 28.5
2316 Male, age 76, right hemisphere 28.0
Red nucleus
nTPM: 30.9
1821 Female, age 72, unknown 36.6
2503 Female, age 72, unknown 32.3
2785 Male, age 18, unknown 31.9
1954 Female, age 42, unknown 31.5
1865 Male, age 51, unknown 31.3
2725 Female, age 75, unknown 31.2
2227 Male, age 72, unknown 30.3
1904 Male, age 53, unknown 30.1
2769 Male, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 29.6
2588 Male, age 74, left hemisphere 28.8
2584 Male, age 75, left hemisphere 27.4
Substantia nigra
nTPM: 32.6
1889 Female, age 72, unknown 35.7
1916 Female, age 42, unknown 35.7
2409 Female, age 72, unknown 35.3
2241 Male, age 72, unknown 35.0
1851 Male, age 51, unknown 34.1
1941 Male, age 53, unknown 33.2
2699 Male, age 18, unknown 30.4
2590 Female, age 75, unknown 29.8
2665 Male, age 74, both hemispheres 29.7
2583 Male, age 75, right hemisphere 27.1
Superior colliculus
nTPM: 30.5
2587 Male, age 74, left hemisphere 33.3
1895 Male, age 76, right hemisphere 32.5
2087 Female, age 72, unknown 31.7
2668 Female, age 75, unknown 31.0
1796 Male, age 53, unknown 30.9
2261 Male, age 18, unknown 30.5
1913 Female, age 42, unknown 29.9
1839 Male, age 51, unknown 29.8
1995 Male, age 72, unknown 28.6
2664 Male, age 75, both hemispheres 26.8
Ventral tegmental area
nTPM: 31.6
2410 Female, age 72, unknown 36.5
1915 Female, age 42, unknown 32.7
2218 Male, age 76, both hemispheres 32.0
1942 Male, age 51, unknown 30.0
2223 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.0
Samples: 139

Max nTPM: 109.0
Min nTPM: 28.1
Std nTPM: 11.3
Median nTPM: 43.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 95.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 84.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 72.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 65.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 64.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 63.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 60.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.3
FF:10158-103A5 76 years, female 52.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 28.3
Samples: 4

Max nTPM: 33.2
Min nTPM: 24.8
Sample A Female 30.2
Sample B Female 24.8
Sample C Male 33.2
Sample D Male 24.8
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 22.6
Min nTPM: 20.3
Sample B Female 21.9
Sample C Male 22.6
Sample D Male 20.3
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 20.0
Sample A Female 29.5
Sample B Female 20.0
Sample C Male 24.0
Sample D Male 20.4
Superior colliculi
nTPM: 30.9
Samples: 4

Max nTPM: 42.3
Min nTPM: 24.2
Sample A Female 29.3
Sample B Female 24.2
Sample C Male 42.3
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 97.8
Min nTPM: 87.4
Sample A Male 87.4
Sample B Male 96.8
Sample C Female 97.8
Sample D Female 92.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
71723912 Antisense, RP_050921_01_B07, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.