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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:100.7 nTPM
HPA:100.7 nTPM
GTEx:132.3 nTPM
FANTOM5:384.0 Scaled Tags Per Million
Pig:99.9 nTPM
Mouse:115.4 nTPM
Allen mouse:18.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 100.7
Sample id Sample description nTPM
Amygdala
nTPM: 71.4
1987 Female, age 91, left hemisphere 81.7
2814 Male, age 76, right hemisphere 78.1
2517 Female, age 94, left hemisphere 77.7
2514 Male, age 75, right hemisphere 64.6
2695 Female, age 67, right hemisphere 54.9
Basal amygdala
nTPM: 90.3
2685 Female, age 94, left hemisphere 108.2
2243 Female, age 91, right hemisphere 106.6
2110 Male, age 80, left hemisphere 96.4
1955 Male, age 76, both hemispheres 78.4
2609 Male, age 75, right hemisphere 78.1
2827 Female, age 67, right hemisphere 74.1
Central amygdala
nTPM: 83.7
2239 Male, age 80, left hemisphere 98.5
2701 Female, age 91, right hemisphere 92.1
2826 Female, age 94, left hemisphere 90.9
1905 Male, age 76, both hemispheres 69.0
2515 Male, age 75, right hemisphere 68.1
Corticomedial amygdala
nTPM: 89.3
2829 Male, age 80, left hemisphere 111.3
2242 Female, age 91, right hemisphere 102.0
2535 Female, age 67, right hemisphere 92.6
2429 Female, age 94, left hemisphere 84.5
2240 Male, age 76, both hemispheres 77.8
2428 Male, age 75, right hemisphere 67.5
Lateral amygdala
nTPM: 77.4
2534 Female, age 94, left hemisphere 98.3
2255 Female, age 91, right hemisphere 90.4
2256 Male, age 80, left hemisphere 80.0
1883 Male, age 76, both hemispheres 78.0
2516 Male, age 75, right hemisphere 62.9
2830 Female, age 67, right hemisphere 54.9
Stria terminalis, bed nucleus
nTPM: 100.7
1974 Female, age 91, both hemispheres 108.9
2486 Female, age 94, both hemispheres 103.5
2201 Male, age 74, unknown 89.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 132.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 132.3
Samples: 152

Max nTPM: 325.1
Min nTPM: 16.2
Std nTPM: 50.3
Median nTPM: 126.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 325.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 278.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 252.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 243.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 232.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 227.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 225.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 221.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 216.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 214.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 212.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 211.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 208.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 203.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 203.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 201.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 200.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 194.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 194.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 186.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 185.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 183.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 179.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 179.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 177.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 174.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 174.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 172.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 171.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 170.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 170.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 170.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 168.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 168.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 168.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 167.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 166.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 165.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 165.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 161.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 160.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 159.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 158.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 155.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 152.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 149.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 147.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 146.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 145.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 143.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 140.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 139.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 139.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 137.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 135.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 135.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 132.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 132.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 130.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 130.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 127.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 126.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 125.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 122.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 122.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 120.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 119.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 117.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 116.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 115.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 114.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 114.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 112.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 112.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 111.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 108.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 108.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 107.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 107.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 107.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 106.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 104.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 101.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 100.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 99.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 99.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 98.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 98.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 97.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 95.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 94.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 94.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 94.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 91.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 90.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 88.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 87.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 87.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 84.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 84.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 83.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 82.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 78.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 77.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 77.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 77.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 76.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 76.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 75.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 74.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 71.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 69.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 69.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 66.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 62.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 50.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 42.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 34.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 384.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 384.0
FF:10151-102I7 76 years, female 384.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.9
Pig sample Sample description nTPM
Amygdala
nTPM: 99.9
Samples: 4

Max nTPM: 147.6
Min nTPM: 73.8
Sample A Female 147.6
Sample B Female 73.8
Sample C Male 87.1
Sample D Male 91.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 115.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 115.4
Samples: 4

Max nTPM: 128.0
Min nTPM: 105.8
Sample A Male 120.2
Sample B Male 107.5
Sample C Female 128.0
Sample D Female 105.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.2
69015218 Antisense, RP_050310_02_E07, Mouse strain C57BL/6J (56 days, male) 18.2

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