MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA:32.7 nTPM
GTEx:47.7 nTPM
FANTOM5:172.4 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:8.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2219 Male, age 76, both hemispheres 44.8
2666 Male, age 74, left hemisphere 38.5
2586 Male, age 75, left hemisphere 32.7
1827 Male, age 72, unknown 30.0
2828 Female, age 72, unknown 28.1
1830 Male, age 51, unknown 28.0
2411 Female, age 72, unknown 27.9
1833 Male, age 53, unknown 27.8
1870 Female, age 42, unknown 27.6
2019 Male, age 18, unknown 27.4
Dorsal raphe nucleus
nTPM: 31.3
2016 Female, age 72, unknown 43.3
2298 Female, age 72, unknown 33.0
1828 Male, age 53, unknown 28.5
2047 Male, age 72, unknown 28.1
2750 Male, age 76, both hemispheres 23.8
Inferior colliculus
nTPM: 26.8
2097 Female, age 72, unknown 27.4
2849 Male, age 72, unknown 27.2
1890 Male, age 53, unknown 26.9
1848 Female, age 42, unknown 25.9
Median raphe nucleus
nTPM: 32.7
2220 Male, age 76, midline 32.7
Pedunculopontine tegmental nucleus
nTPM: 32.5
2338 Male, age 61, both hemispheres 38.4
2334 Male, age 80, both hemispheres 33.4
1921 Female, age 85, both hemispheres 25.6
Periaquaductal grey, anterior
nTPM: 30.5
1795 Male, age 51, unknown 34.3
1947 Male, age 18, unknown 29.4
2502 Female, age 75, unknown 27.8
Periaquaductal grey, dorsal
nTPM: 28.7
2850 Male, age 76, both hemispheres 30.6
1831 Male, age 72, unknown 29.9
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 26.5
Periaquaductal grey, lateral
nTPM: 32.1
2272 Male, age 74, both hemispheres 38.3
2053 Male, age 18, unknown 30.0
2140 Male, age 76, both hemispheres 28.0
Pretectal area
nTPM: 30.2
2224 Female, age 72, unknown 34.2
1817 Female, age 42, unknown 33.1
2007 Male, age 72, unknown 32.1
2273 Male, age 74, both hemispheres 32.0
1816 Male, age 51, unknown 31.2
2825 Male, age 18, unknown 31.1
1815 Male, age 53, unknown 30.4
2407 Male, age 75, both hemispheres 28.9
1944 Female, age 72, unknown 28.4
2667 Female, age 75, unknown 27.0
2316 Male, age 76, right hemisphere 23.4
Red nucleus
nTPM: 28.5
2584 Male, age 75, left hemisphere 33.0
2588 Male, age 74, left hemisphere 29.9
1904 Male, age 53, unknown 29.4
2725 Female, age 75, unknown 29.1
2785 Male, age 18, unknown 29.0
2503 Female, age 72, unknown 28.5
1865 Male, age 51, unknown 28.4
2227 Male, age 72, unknown 28.3
1954 Female, age 42, unknown 28.2
2769 Male, age 72, unknown 28.0
1821 Female, age 72, unknown 27.5
2823 Male, age 76, right hemisphere 23.0
Substantia nigra
nTPM: 29.8
2583 Male, age 75, right hemisphere 33.0
2665 Male, age 74, both hemispheres 32.1
1916 Female, age 42, unknown 31.1
2699 Male, age 18, unknown 30.6
2590 Female, age 75, unknown 30.3
1851 Male, age 51, unknown 29.9
1889 Female, age 72, unknown 28.3
2241 Male, age 72, unknown 28.1
1941 Male, age 53, unknown 27.5
2409 Female, age 72, unknown 27.0
Superior colliculus
nTPM: 30.0
1796 Male, age 53, unknown 36.4
2668 Female, age 75, unknown 34.5
2261 Male, age 18, unknown 32.7
1995 Male, age 72, unknown 30.4
2664 Male, age 75, both hemispheres 29.6
1913 Female, age 42, unknown 29.3
2587 Male, age 74, left hemisphere 28.6
1839 Male, age 51, unknown 27.8
2087 Female, age 72, unknown 27.6
1895 Male, age 76, right hemisphere 23.1
Ventral tegmental area
nTPM: 28.5
1915 Female, age 42, unknown 30.1
2021 Male, age 53, unknown 30.0
2223 Female, age 72, unknown 29.7
2410 Female, age 72, unknown 28.5
1942 Male, age 51, unknown 27.8
2218 Male, age 76, both hemispheres 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.7
Samples: 139

Max nTPM: 366.5
Min nTPM: 12.5
Std nTPM: 51.6
Median nTPM: 27.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 366.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 248.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 213.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 197.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 178.1
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 175.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 161.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 157.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 150.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 149.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 123.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.4
FF:10158-103A5 76 years, female 172.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.5
Sample A Female 12.7
Sample B Female 9.6
Sample C Male 13.6
Sample D Male 9.5
Periaqueductal gray
nTPM: 11.1
Samples: 3

Max nTPM: 13.5
Min nTPM: 9.3
Sample B Female 9.3
Sample C Male 13.5
Sample D Male 10.6
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 15.1
Min nTPM: 10.6
Sample A Female 15.1
Sample B Female 13.4
Sample C Male 15.1
Sample D Male 10.6
Superior colliculi
nTPM: 15.7
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.4
Sample A Female 14.8
Sample B Female 20.9
Sample C Male 13.5
Sample D Male 13.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.5
Sample A Male 9.6
Sample B Male 7.5
Sample C Female 8.0
Sample D Female 8.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71789861 Antisense, RP_050921_03_G07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.