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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.8 nTPM
HPA:134.8 nTPM
GTEx:105.3 nTPM
FANTOM5:112.8 Scaled Tags Per Million
Pig:65.4 nTPM
Mouse:221.1 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 134.8
Sample id Sample description nTPM
Amygdala
nTPM: 134.8
2814 Male, age 76, right hemisphere 141.3
2695 Female, age 67, right hemisphere 139.3
2514 Male, age 75, right hemisphere 134.3
2517 Female, age 94, left hemisphere 129.9
1987 Female, age 91, left hemisphere 129.2
Basal amygdala
nTPM: 128.9
2609 Male, age 75, right hemisphere 136.5
2110 Male, age 80, left hemisphere 130.6
2243 Female, age 91, right hemisphere 128.4
1955 Male, age 76, both hemispheres 128.1
2685 Female, age 94, left hemisphere 125.8
2827 Female, age 67, right hemisphere 124.0
Central amygdala
nTPM: 132.6
1905 Male, age 76, both hemispheres 138.1
2826 Female, age 94, left hemisphere 136.5
2515 Male, age 75, right hemisphere 132.1
2239 Male, age 80, left hemisphere 128.9
2701 Female, age 91, right hemisphere 127.6
Corticomedial amygdala
nTPM: 130.2
2428 Male, age 75, right hemisphere 135.6
2429 Female, age 94, left hemisphere 132.9
2829 Male, age 80, left hemisphere 132.1
2240 Male, age 76, both hemispheres 128.9
2242 Female, age 91, right hemisphere 127.3
2535 Female, age 67, right hemisphere 124.2
Lateral amygdala
nTPM: 131.4
2516 Male, age 75, right hemisphere 140.7
1883 Male, age 76, both hemispheres 139.3
2534 Female, age 94, left hemisphere 131.7
2830 Female, age 67, right hemisphere 127.9
2256 Male, age 80, left hemisphere 124.6
2255 Female, age 91, right hemisphere 124.4
Stria terminalis, bed nucleus
nTPM: 132.4
1974 Female, age 91, both hemispheres 137.4
2486 Female, age 94, both hemispheres 131.9
2201 Male, age 74, unknown 128.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 105.3
Samples: 152

Max nTPM: 233.1
Min nTPM: 62.2
Std nTPM: 21.8
Median nTPM: 102.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 233.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 165.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 164.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 156.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 151.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 149.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 147.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 140.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 139.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 130.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 130.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 128.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 127.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 126.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 126.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 126.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 125.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 125.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 125.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 125.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 124.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 122.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 122.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 122.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 121.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 118.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 118.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 117.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 117.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 117.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 115.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 113.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 112.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 112.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 112.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 111.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 111.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 111.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 111.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 111.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 110.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 110.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 110.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 110.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 109.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 109.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 109.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 107.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 106.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 105.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 105.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 105.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 104.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 104.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 104.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 104.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 104.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 104.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 104.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 103.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 102.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 102.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 102.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 102.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 101.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 101.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 101.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 101.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 99.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 99.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 99.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 99.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 99.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 99.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 98.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 98.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 98.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 97.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 96.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 96.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 95.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 95.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 95.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 94.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 94.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 93.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 93.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 93.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 93.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 93.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 93.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 92.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 91.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 91.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 89.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 88.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 88.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 88.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 87.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 87.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 87.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 86.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 85.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 85.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 84.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 82.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 82.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 80.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 80.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 78.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 78.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 77.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 69.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 62.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 112.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 112.8
FF:10151-102I7 76 years, female 112.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 65.4
Pig sample Sample description nTPM
Amygdala
nTPM: 65.4
Samples: 4

Max nTPM: 82.3
Min nTPM: 50.6
Sample A Female 82.3
Sample B Female 68.0
Sample C Male 60.7
Sample D Male 50.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 221.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 221.1
Samples: 4

Max nTPM: 228.6
Min nTPM: 213.4
Sample A Male 228.6
Sample B Male 220.2
Sample C Female 222.1
Sample D Female 213.4

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