MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.4 nTPM
HPA:34.4 nTPM
GTEx:65.0 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:18.2 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.9
2586 Male, age 75, left hemisphere 43.2
2828 Female, age 72, unknown 38.8
1870 Female, age 42, unknown 36.7
2666 Male, age 74, left hemisphere 34.9
2019 Male, age 18, unknown 34.2
1833 Male, age 53, unknown 31.5
1827 Male, age 72, unknown 31.2
2411 Female, age 72, unknown 30.7
1830 Male, age 51, unknown 30.2
2219 Male, age 76, both hemispheres 27.3
Dorsal raphe nucleus
nTPM: 28.7
2750 Male, age 76, both hemispheres 32.2
2016 Female, age 72, unknown 30.6
2047 Male, age 72, unknown 27.2
1828 Male, age 53, unknown 27.0
2298 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 26.7
2849 Male, age 72, unknown 29.5
1890 Male, age 53, unknown 27.0
1848 Female, age 42, unknown 26.9
2097 Female, age 72, unknown 23.2
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Pedunculopontine tegmental nucleus
nTPM: 26.2
2334 Male, age 80, both hemispheres 27.5
1921 Female, age 85, both hemispheres 25.9
2338 Male, age 61, both hemispheres 25.3
Periaquaductal grey, anterior
nTPM: 32.7
2502 Female, age 75, unknown 34.7
1795 Male, age 51, unknown 32.7
1947 Male, age 18, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 30.2
1840 Male, age 53, unknown 27.9
1831 Male, age 72, unknown 27.3
2464 Female, age 72, unknown 24.5
Periaquaductal grey, lateral
nTPM: 29.1
2053 Male, age 18, unknown 31.0
2272 Male, age 74, both hemispheres 28.7
2140 Male, age 76, both hemispheres 27.6
Pretectal area
nTPM: 32.7
2407 Male, age 75, both hemispheres 41.5
2007 Male, age 72, unknown 36.9
1816 Male, age 51, unknown 35.0
1815 Male, age 53, unknown 34.8
1817 Female, age 42, unknown 33.2
2667 Female, age 75, unknown 32.1
2316 Male, age 76, right hemisphere 31.4
2825 Male, age 18, unknown 31.2
1944 Female, age 72, unknown 30.2
2273 Male, age 74, both hemispheres 27.8
2224 Female, age 72, unknown 26.0
Red nucleus
nTPM: 34.4
2584 Male, age 75, left hemisphere 39.1
2769 Male, age 72, unknown 39.0
2227 Male, age 72, unknown 38.1
1904 Male, age 53, unknown 37.1
2785 Male, age 18, unknown 35.7
1865 Male, age 51, unknown 35.4
1821 Female, age 72, unknown 32.6
2503 Female, age 72, unknown 32.6
2823 Male, age 76, right hemisphere 32.2
2588 Male, age 74, left hemisphere 31.7
2725 Female, age 75, unknown 29.9
1954 Female, age 42, unknown 29.8
Substantia nigra
nTPM: 29.0
2665 Male, age 74, both hemispheres 37.9
2583 Male, age 75, right hemisphere 36.5
2590 Female, age 75, unknown 32.4
1851 Male, age 51, unknown 31.2
2699 Male, age 18, unknown 30.7
1916 Female, age 42, unknown 30.2
1889 Female, age 72, unknown 29.9
1941 Male, age 53, unknown 22.5
2409 Female, age 72, unknown 22.5
2241 Male, age 72, unknown 15.8
Superior colliculus
nTPM: 33.9
2664 Male, age 75, both hemispheres 45.8
1995 Male, age 72, unknown 39.6
1913 Female, age 42, unknown 38.1
1796 Male, age 53, unknown 36.4
2668 Female, age 75, unknown 32.3
1839 Male, age 51, unknown 30.6
2261 Male, age 18, unknown 30.6
2087 Female, age 72, unknown 29.9
2587 Male, age 74, left hemisphere 28.3
1895 Male, age 76, right hemisphere 27.0
Ventral tegmental area
nTPM: 29.8
2223 Female, age 72, unknown 32.5
2021 Male, age 53, unknown 32.3
1942 Male, age 51, unknown 29.9
1915 Female, age 42, unknown 29.0
2410 Female, age 72, unknown 28.6
2218 Male, age 76, both hemispheres 26.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.0
Samples: 139

Max nTPM: 120.3
Min nTPM: 42.6
Std nTPM: 11.3
Median nTPM: 63.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 120.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 97.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 92.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 90.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 90.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 88.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 85.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 84.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 81.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 80.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 80.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.1
Pig sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 81.3
Min nTPM: 44.0
Sample A Female 81.3
Sample B Female 44.9
Sample C Male 50.4
Sample D Male 44.0
Periaqueductal gray
nTPM: 46.4
Samples: 3

Max nTPM: 50.8
Min nTPM: 43.9
Sample B Female 44.5
Sample C Male 50.8
Sample D Male 43.9
Substantia nigra
nTPM: 50.8
Samples: 4

Max nTPM: 54.4
Min nTPM: 43.3
Sample A Female 53.5
Sample B Female 43.3
Sample C Male 51.8
Sample D Male 54.4
Superior colliculi
nTPM: 51.3
Samples: 4

Max nTPM: 59.3
Min nTPM: 42.6
Sample A Female 59.3
Sample B Female 42.6
Sample C Male 50.2
Sample D Male 52.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.2
Sample A Male 19.7
Sample B Male 17.2
Sample C Female 17.8
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
69735747 Antisense, RP_050503_03_D12, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.