BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.0 nTPM
HPA:38.0 nTPM
GTEx:38.2 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:101.3 nTPM
Allen mouse:11.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039457
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.8
2288 Male, age 75, left hemisphere 34.5
2846 Female, age 79, unknown 32.2
1857 Female, age 85, left hemisphere 31.3
1854 Male, age 80, left hemisphere 30.9
1781 Male, age 74, unknown 29.9
2481 Female, age 94, left hemisphere 29.5
2290 Female, age 72, unknown 29.1
2289 Male, age 61, right hemisphere 28.7
Claustrum
nTPM: 34.5
2491 Male, age 75, both hemispheres 37.5
2198 Male, age 80, both hemispheres 36.6
1956 Male, age 74, unknown 36.4
2292 Female, age 85, both hemispheres 35.8
2392 Female, age 94, both hemispheres 35.4
2568 Male, age 61, both hemispheres 34.9
2196 Female, age 79, unknown 32.4
2284 Female, age 91, both hemispheres 32.2
2645 Female, age 72, unknown 29.7
Globus pallidus, externus
nTPM: 37.0
2772 Female, age 79, unknown 40.5
2395 Male, age 75, both hemispheres 40.4
1996 Male, age 80, right hemisphere 37.5
2567 Female, age 72, unknown 36.7
2646 Male, age 61, right hemisphere 30.1
Globus pallidus, internus
nTPM: 38.0
2287 Male, age 75, right hemisphere 46.2
2778 Female, age 91, both hemispheres 43.2
2111 Female, age 85, right hemisphere 38.7
2566 Female, age 72, unknown 35.4
1818 Male, age 74, unknown 34.8
2483 Female, age 94, right hemisphere 33.9
2037 Male, age 80, right hemisphere 33.6
Nucleus accumbens
nTPM: 32.5
2286 Male, age 75, left hemisphere 36.1
2824 Male, age 61, right hemisphere 33.6
1806 Female, age 85, left hemisphere 32.9
1783 Male, age 74, unknown 32.8
2391 Female, age 94, left hemisphere 32.5
2698 Female, age 72, unknown 31.7
2732 Male, age 80, right hemisphere 31.2
1856 Female, age 91, right hemisphere 29.4
Nucleus basalis of Meynert
nTPM: 31.3
2821 Male, age 75, both hemispheres 33.6
2484 Female, age 94, left hemisphere 32.1
2393 Male, age 80, right hemisphere 30.2
2569 Male, age 61, both hemispheres 29.5
Nucleus of the diagonal band
nTPM: 32.2
2029 Male, age 61, right hemisphere 35.9
2775 Male, age 80, right hemisphere 34.1
2195 Female, age 85, both hemispheres 32.0
1812 Female, age 91, both hemispheres 31.7
1979 Male, age 74, unknown 27.4
Olfactory tubercle
nTPM: 31.5
1846 Male, age 80, right hemisphere 33.1
2487 Female, age 94, left hemisphere 33.1
1998 Female, age 91, both hemispheres 32.7
2856 Male, age 75, right hemisphere 27.1
Putamen
nTPM: 31.6
2466 Female, age 79, unknown 34.5
1829 Male, age 74, unknown 33.4
1838 Male, age 80, right hemisphere 32.0
1937 Female, age 91, right hemisphere 31.0
2482 Female, age 94, left hemisphere 30.7
2489 Female, age 72, unknown 29.9
2647 Male, age 75, left hemisphere 29.3
Septal nuclei
nTPM: 30.5
1960 Male, age 74, unknown 34.6
2031 Female, age 72, unknown 33.0
2059 Female, age 85, both hemispheres 31.4
2394 Male, age 61, left hemisphere 30.0
2629 Female, age 94, right hemisphere 29.6
2009 Female, age 91, both hemispheres 28.8
2199 Male, age 80, right hemisphere 26.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.1
Samples: 246

Max nTPM: 60.0
Min nTPM: 14.8
Std nTPM: 8.5
Median nTPM: 36.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 60.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 55.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 54.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 53.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 52.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 52.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 52.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 51.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 51.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 50.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 50.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 83.2
Min nTPM: 5.8
Std nTPM: 11.0
Median nTPM: 33.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 83.2
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 69.8
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 56.1
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 54.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 53.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 53.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 52.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 51.2
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 50.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 50.7
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 50.2
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Brain - Putamen (basal ganglia)
Average nTPM: 38.2
Samples: 205

Max nTPM: 76.0
Min nTPM: 18.8
Std nTPM: 9.8
Median nTPM: 37.9
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 76.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 64.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 61.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 60.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 60.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 59.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 57.9
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 56.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 56.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 55.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 54.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.6
FF:10164-103B2 76 years, female 63.6
Globus pallidus
Scaled Tags Per Million: 87.7
FF:10161-103A8 76 years, female 90.1
FF:10175-103C4 60 years, female 85.2
Nucleus accumbens
Scaled Tags Per Million: 93.4
FF:10037-101F1 23-56 years, mixed 93.4
Putamen
Scaled Tags Per Million: 51.9
FF:10176-103C5 60 years, female 51.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Caudate
nTPM: 10.8
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.5
Sample A Female 12.5
Sample B Female 10.9
Sample C Male 10.3
Sample D Male 9.5
Putamen
nTPM: 10.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.0
Sample A Female 11.4
Sample B Female 9.6
Sample C Male 12.0
Sample D Male 9.0
Septum
nTPM: 11.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 9.5
Sample A Female 12.8
Sample B Female 10.6
Sample C Male 10.9
Sample D Male 9.5
Ventral pallidum
nTPM: 10.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 9.4
Sample A Female 11.7
Sample B Female 11.1
Sample C Male 9.4
Sample D Male 9.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 101.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.3
Samples: 4

Max nTPM: 107.7
Min nTPM: 96.5
Sample A Male 96.5
Sample B Male 100.7
Sample C Female 100.3
Sample D Female 107.7
Septum
nTPM: 90.6
Samples: 4

Max nTPM: 93.3
Min nTPM: 86.4
Sample A Male 93.3
Sample B Male 91.8
Sample C Female 90.8
Sample D Female 86.4
Ventral forebrain
nTPM: 100.6
Samples: 4

Max nTPM: 107.6
Min nTPM: 95.7
Sample A Male 97.9
Sample B Male 95.7
Sample C Female 107.6
Sample D Female 101.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.8
69838210 Antisense, RP_050224_02_D04, Mouse strain C57BL/6J (56 days, male) 11.8
Pallidum
Expression energy: 11.8
69838210 Antisense, RP_050224_02_D04, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

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