MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:43.0 nTPM
HPA:43.0 nTPM
GTEx:57.6 nTPM
FANTOM5:128.6 Scaled Tags Per Million
Pig:60.6 nTPM
Mouse:155.4 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
1870 Female, age 42, unknown 44.3
2411 Female, age 72, unknown 42.2
1827 Male, age 72, unknown 40.3
1833 Male, age 53, unknown 40.3
2019 Male, age 18, unknown 40.3
2828 Female, age 72, unknown 39.3
1830 Male, age 51, unknown 38.2
2219 Male, age 76, both hemispheres 36.4
2586 Male, age 75, left hemisphere 35.6
2666 Male, age 74, left hemisphere 29.6
Dorsal raphe nucleus
nTPM: 38.5
2298 Female, age 72, unknown 42.8
2750 Male, age 76, both hemispheres 41.5
1828 Male, age 53, unknown 39.8
2047 Male, age 72, unknown 35.1
2016 Female, age 72, unknown 33.3
Inferior colliculus
nTPM: 42.1
2849 Male, age 72, unknown 45.7
2097 Female, age 72, unknown 41.5
1848 Female, age 42, unknown 40.9
1890 Male, age 53, unknown 40.3
Median raphe nucleus
nTPM: 43.0
2220 Male, age 76, midline 43.0
Pedunculopontine tegmental nucleus
nTPM: 43.0
1921 Female, age 85, both hemispheres 43.8
2338 Male, age 61, both hemispheres 43.0
2334 Male, age 80, both hemispheres 42.1
Periaquaductal grey, anterior
nTPM: 39.3
2502 Female, age 75, unknown 42.8
1795 Male, age 51, unknown 37.5
1947 Male, age 18, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 39.7
2850 Male, age 76, both hemispheres 43.9
1840 Male, age 53, unknown 41.4
1831 Male, age 72, unknown 39.2
2464 Female, age 72, unknown 34.6
Periaquaductal grey, lateral
nTPM: 35.5
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 36.8
2272 Male, age 74, both hemispheres 32.8
Pretectal area
nTPM: 41.3
1817 Female, age 42, unknown 45.9
2007 Male, age 72, unknown 43.8
1816 Male, age 51, unknown 43.5
2667 Female, age 75, unknown 43.3
1944 Female, age 72, unknown 41.9
1815 Male, age 53, unknown 41.2
2407 Male, age 75, both hemispheres 41.2
2224 Female, age 72, unknown 40.4
2825 Male, age 18, unknown 40.3
2273 Male, age 74, both hemispheres 36.8
2316 Male, age 76, right hemisphere 35.5
Red nucleus
nTPM: 42.4
1821 Female, age 72, unknown 46.3
2725 Female, age 75, unknown 45.4
1865 Male, age 51, unknown 44.3
2227 Male, age 72, unknown 44.1
2503 Female, age 72, unknown 43.4
2769 Male, age 72, unknown 43.4
1954 Female, age 42, unknown 41.7
2785 Male, age 18, unknown 41.5
2823 Male, age 76, right hemisphere 41.3
1904 Male, age 53, unknown 40.9
2588 Male, age 74, left hemisphere 39.3
2584 Male, age 75, left hemisphere 36.9
Substantia nigra
nTPM: 36.6
1889 Female, age 72, unknown 43.8
1916 Female, age 42, unknown 39.4
2665 Male, age 74, both hemispheres 39.0
1851 Male, age 51, unknown 38.8
2699 Male, age 18, unknown 37.8
2590 Female, age 75, unknown 35.4
2583 Male, age 75, right hemisphere 35.1
1941 Male, age 53, unknown 35.0
2409 Female, age 72, unknown 32.2
2241 Male, age 72, unknown 30.1
Superior colliculus
nTPM: 40.5
2587 Male, age 74, left hemisphere 44.3
1895 Male, age 76, right hemisphere 44.0
1913 Female, age 42, unknown 43.7
1796 Male, age 53, unknown 43.3
1995 Male, age 72, unknown 42.1
2087 Female, age 72, unknown 41.5
1839 Male, age 51, unknown 39.2
2261 Male, age 18, unknown 38.4
2664 Male, age 75, both hemispheres 34.4
2668 Female, age 75, unknown 33.8
Ventral tegmental area
nTPM: 38.9
2223 Female, age 72, unknown 41.9
2410 Female, age 72, unknown 40.9
1915 Female, age 42, unknown 39.9
2218 Male, age 76, both hemispheres 39.9
1942 Male, age 51, unknown 35.4
2021 Male, age 53, unknown 35.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.6
Samples: 139

Max nTPM: 102.4
Min nTPM: 17.3
Std nTPM: 15.6
Median nTPM: 56.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 102.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 96.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 95.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 95.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 92.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 87.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 86.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 85.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 85.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 82.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 79.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 128.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 128.6
FF:10158-103A5 76 years, female 128.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.6
Pig sample Sample description nTPM
Midbrain
nTPM: 60.6
Samples: 4

Max nTPM: 82.4
Min nTPM: 45.0
Sample A Female 82.4
Sample B Female 57.4
Sample C Male 57.7
Sample D Male 45.0
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 64.0
Min nTPM: 46.5
Sample B Female 61.5
Sample C Male 64.0
Sample D Male 46.5
Substantia nigra
nTPM: 54.3
Samples: 4

Max nTPM: 56.2
Min nTPM: 51.6
Sample A Female 53.7
Sample B Female 51.6
Sample C Male 56.2
Sample D Male 55.5
Superior colliculi
nTPM: 55.3
Samples: 4

Max nTPM: 61.2
Min nTPM: 48.1
Sample A Female 59.5
Sample B Female 48.1
Sample C Male 61.2
Sample D Male 52.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 155.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.4
Samples: 4

Max nTPM: 169.7
Min nTPM: 149.5
Sample A Male 169.7
Sample B Male 152.8
Sample C Female 149.5
Sample D Female 149.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
68301512 Antisense, RP_041130_01_D05, Mouse strain C57BL/6J (56 days, male) 14.0
69527830 Antisense, RP_050421_02_E08, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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