MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:34.7 nTPM
HPA:34.7 nTPM
GTEx:35.2 nTPM
FANTOM5:102.6 Scaled Tags Per Million
Pig:5.8 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.3
2666 Male, age 74, left hemisphere 31.6
1830 Male, age 51, unknown 31.5
2828 Female, age 72, unknown 30.9
1833 Male, age 53, unknown 30.7
2019 Male, age 18, unknown 30.2
1870 Female, age 42, unknown 30.0
2219 Male, age 76, both hemispheres 29.0
2411 Female, age 72, unknown 27.2
1827 Male, age 72, unknown 26.7
2586 Male, age 75, left hemisphere 25.2
Dorsal raphe nucleus
nTPM: 30.6
2047 Male, age 72, unknown 31.2
2750 Male, age 76, both hemispheres 31.2
1828 Male, age 53, unknown 30.7
2016 Female, age 72, unknown 30.2
2298 Female, age 72, unknown 29.4
Inferior colliculus
nTPM: 29.1
1890 Male, age 53, unknown 30.9
2849 Male, age 72, unknown 29.7
1848 Female, age 42, unknown 28.0
2097 Female, age 72, unknown 28.0
Median raphe nucleus
nTPM: 34.7
2220 Male, age 76, midline 34.7
Pedunculopontine tegmental nucleus
nTPM: 34.2
2338 Male, age 61, both hemispheres 44.4
2334 Male, age 80, both hemispheres 31.9
1921 Female, age 85, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 28.8
1795 Male, age 51, unknown 29.4
2502 Female, age 75, unknown 28.5
1947 Male, age 18, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 30.6
1831 Male, age 72, unknown 34.0
2850 Male, age 76, both hemispheres 33.7
2464 Female, age 72, unknown 27.5
1840 Male, age 53, unknown 27.3
Periaquaductal grey, lateral
nTPM: 30.9
2272 Male, age 74, both hemispheres 31.7
2140 Male, age 76, both hemispheres 31.2
2053 Male, age 18, unknown 29.8
Pretectal area
nTPM: 28.8
2273 Male, age 74, both hemispheres 30.1
2316 Male, age 76, right hemisphere 29.6
2224 Female, age 72, unknown 29.4
1817 Female, age 42, unknown 29.3
2407 Male, age 75, both hemispheres 29.2
1815 Male, age 53, unknown 29.1
1944 Female, age 72, unknown 28.8
2667 Female, age 75, unknown 28.8
2825 Male, age 18, unknown 28.7
2007 Male, age 72, unknown 27.7
1816 Male, age 51, unknown 26.3
Red nucleus
nTPM: 30.9
2823 Male, age 76, right hemisphere 33.4
1865 Male, age 51, unknown 33.0
1954 Female, age 42, unknown 32.0
2725 Female, age 75, unknown 31.5
1904 Male, age 53, unknown 31.4
2769 Male, age 72, unknown 31.2
2503 Female, age 72, unknown 30.9
2785 Male, age 18, unknown 30.7
2227 Male, age 72, unknown 30.2
1821 Female, age 72, unknown 29.7
2584 Male, age 75, left hemisphere 29.4
2588 Male, age 74, left hemisphere 27.5
Substantia nigra
nTPM: 31.3
2665 Male, age 74, both hemispheres 38.4
2699 Male, age 18, unknown 35.2
2409 Female, age 72, unknown 33.5
2590 Female, age 75, unknown 31.2
1851 Male, age 51, unknown 30.3
2583 Male, age 75, right hemisphere 29.9
1941 Male, age 53, unknown 29.4
1916 Female, age 42, unknown 28.5
2241 Male, age 72, unknown 28.4
1889 Female, age 72, unknown 28.0
Superior colliculus
nTPM: 29.5
1913 Female, age 42, unknown 33.2
2587 Male, age 74, left hemisphere 33.2
1995 Male, age 72, unknown 31.8
1839 Male, age 51, unknown 29.8
2087 Female, age 72, unknown 29.8
2668 Female, age 75, unknown 28.6
1796 Male, age 53, unknown 27.8
1895 Male, age 76, right hemisphere 27.5
2261 Male, age 18, unknown 26.9
2664 Male, age 75, both hemispheres 26.4
Ventral tegmental area
nTPM: 31.8
2223 Female, age 72, unknown 34.0
2021 Male, age 53, unknown 33.8
2218 Male, age 76, both hemispheres 32.6
1915 Female, age 42, unknown 31.0
2410 Female, age 72, unknown 29.8
1942 Male, age 51, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 105.3
Min nTPM: 9.2
Std nTPM: 17.7
Median nTPM: 31.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 105.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 87.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 87.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 81.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 76.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 76.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 70.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 68.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 66.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 61.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 61.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 102.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.6
FF:10158-103A5 76 years, female 102.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.8
Pig sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.2
Sample A Female 3.5
Sample B Female 2.2
Sample C Male 2.4
Sample D Male 2.6
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 3.5
Min nTPM: 1.7
Sample B Female 1.7
Sample C Male 3.5
Sample D Male 1.9
Substantia nigra
nTPM: 3.7
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.7
Sample A Female 3.1
Sample B Female 5.5
Sample C Male 2.7
Sample D Male 3.3
Superior colliculi
nTPM: 5.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 2.4
Sample A Female 5.6
Sample B Female 11.6
Sample C Male 2.4
Sample D Male 3.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.