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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:27.2 nTPM
HPA:27.2 nTPM
GTEx:122.1 nTPM
FANTOM5:223.6 Scaled Tags Per Million
Pig:85.2 nTPM
Mouse:196.1 nTPM
Allen mouse:23.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Amygdala
nTPM: 18.2
2814 Male, age 76, right hemisphere 32.3
2517 Female, age 94, left hemisphere 17.9
2695 Female, age 67, right hemisphere 15.4
1987 Female, age 91, left hemisphere 13.3
2514 Male, age 75, right hemisphere 12.0
Basal amygdala
nTPM: 24.5
2685 Female, age 94, left hemisphere 33.1
2243 Female, age 91, right hemisphere 32.0
2609 Male, age 75, right hemisphere 29.3
1955 Male, age 76, both hemispheres 25.4
2110 Male, age 80, left hemisphere 17.7
2827 Female, age 67, right hemisphere 9.5
Central amygdala
nTPM: 27.2
2826 Female, age 94, left hemisphere 31.6
2701 Female, age 91, right hemisphere 26.8
1905 Male, age 76, both hemispheres 26.1
2239 Male, age 80, left hemisphere 25.9
2515 Male, age 75, right hemisphere 25.5
Corticomedial amygdala
nTPM: 22.4
2829 Male, age 80, left hemisphere 32.3
2242 Female, age 91, right hemisphere 26.9
2429 Female, age 94, left hemisphere 22.4
2428 Male, age 75, right hemisphere 19.4
2535 Female, age 67, right hemisphere 17.8
2240 Male, age 76, both hemispheres 15.6
Lateral amygdala
nTPM: 22.0
2534 Female, age 94, left hemisphere 33.0
1883 Male, age 76, both hemispheres 29.4
2255 Female, age 91, right hemisphere 22.4
2256 Male, age 80, left hemisphere 20.5
2516 Male, age 75, right hemisphere 19.2
2830 Female, age 67, right hemisphere 7.4
Stria terminalis, bed nucleus
nTPM: 26.8
1974 Female, age 91, both hemispheres 28.0
2201 Male, age 74, unknown 26.6
2486 Female, age 94, both hemispheres 25.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 122.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 122.1
Samples: 152

Max nTPM: 297.2
Min nTPM: 29.5
Std nTPM: 33.4
Median nTPM: 119.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 297.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 217.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 189.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 189.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 182.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 173.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 170.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 169.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 168.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 165.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 163.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 162.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 162.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 161.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 161.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 160.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 159.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 159.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 158.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 158.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 158.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 156.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 155.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 154.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 152.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 150.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 149.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 149.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 148.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 146.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 146.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 144.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 143.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 142.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 140.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 139.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 139.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 138.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 138.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 137.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 137.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 136.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 135.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 134.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 133.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 133.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 133.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 131.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 130.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 130.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 130.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 130.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 129.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 128.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 125.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 125.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 125.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 124.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 124.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 123.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 123.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 122.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 121.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 121.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 119.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 119.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 119.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 118.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 117.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 117.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 116.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 114.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 113.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 113.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 112.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 111.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 111.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 111.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 110.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 110.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 110.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 109.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 109.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 107.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 107.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 107.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 106.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 105.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 105.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 105.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 103.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 101.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 98.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 97.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 97.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 96.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 96.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 95.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 93.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 93.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 91.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 91.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 89.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 88.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 88.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 87.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 87.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 84.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 83.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 82.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 81.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 81.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 78.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 75.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 65.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 63.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 52.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 29.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 223.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 223.6
FF:10151-102I7 76 years, female 223.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 85.2
Pig sample Sample description nTPM
Amygdala
nTPM: 85.2
Samples: 4

Max nTPM: 124.4
Min nTPM: 62.7
Sample A Female 124.4
Sample B Female 62.7
Sample C Male 80.1
Sample D Male 73.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 196.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 196.1
Samples: 4

Max nTPM: 208.4
Min nTPM: 187.5
Sample A Male 208.4
Sample B Male 194.2
Sample C Female 194.3
Sample D Female 187.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.6
413811 Antisense, RP_040809_01_F07, Mouse strain C57BL/6J (56 days, male) 23.6

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