BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.0 nTPM
HPA:3.0 nTPM
GTEx:2.4 nTPM
FANTOM5:15.1 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:2.2 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA042881
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
1854 Male, age 80, left hemisphere 3.0
2288 Male, age 75, left hemisphere 2.9
2846 Female, age 79, unknown 2.8
2289 Male, age 61, right hemisphere 2.6
2481 Female, age 94, left hemisphere 2.4
1781 Male, age 74, unknown 2.3
2290 Female, age 72, unknown 2.1
1857 Female, age 85, left hemisphere 1.7
Claustrum
nTPM: 2.7
2392 Female, age 94, both hemispheres 3.3
2568 Male, age 61, both hemispheres 3.2
2491 Male, age 75, both hemispheres 3.0
1956 Male, age 74, unknown 2.7
2292 Female, age 85, both hemispheres 2.6
2198 Male, age 80, both hemispheres 2.5
2196 Female, age 79, unknown 2.4
2284 Female, age 91, both hemispheres 2.2
2645 Female, age 72, unknown 2.0
Globus pallidus, externus
nTPM: 2.6
2567 Female, age 72, unknown 3.5
2395 Male, age 75, both hemispheres 3.2
1996 Male, age 80, right hemisphere 2.5
2772 Female, age 79, unknown 2.4
2646 Male, age 61, right hemisphere 1.6
Globus pallidus, internus
nTPM: 3.0
2111 Female, age 85, right hemisphere 3.8
2566 Female, age 72, unknown 3.5
2287 Male, age 75, right hemisphere 3.3
2778 Female, age 91, both hemispheres 3.3
2037 Male, age 80, right hemisphere 2.6
1818 Male, age 74, unknown 2.4
2483 Female, age 94, right hemisphere 2.0
Nucleus accumbens
nTPM: 2.7
2824 Male, age 61, right hemisphere 3.3
2732 Male, age 80, right hemisphere 3.1
2698 Female, age 72, unknown 2.8
1856 Female, age 91, right hemisphere 2.7
1783 Male, age 74, unknown 2.6
2286 Male, age 75, left hemisphere 2.6
2391 Female, age 94, left hemisphere 2.6
1806 Female, age 85, left hemisphere 2.2
Nucleus basalis of Meynert
nTPM: 2.6
2821 Male, age 75, both hemispheres 3.4
2393 Male, age 80, right hemisphere 3.3
2484 Female, age 94, left hemisphere 2.2
2569 Male, age 61, both hemispheres 1.5
Nucleus of the diagonal band
nTPM: 2.8
2029 Male, age 61, right hemisphere 3.7
1979 Male, age 74, unknown 3.2
1812 Female, age 91, both hemispheres 2.4
2195 Female, age 85, both hemispheres 2.4
2775 Male, age 80, right hemisphere 2.4
Olfactory tubercle
nTPM: 2.9
2487 Female, age 94, left hemisphere 3.2
2856 Male, age 75, right hemisphere 3.2
1846 Male, age 80, right hemisphere 3.1
1998 Female, age 91, both hemispheres 2.3
Putamen
nTPM: 2.3
1937 Female, age 91, right hemisphere 2.9
1829 Male, age 74, unknown 2.7
2466 Female, age 79, unknown 2.3
1838 Male, age 80, right hemisphere 2.2
2647 Male, age 75, left hemisphere 2.2
2489 Female, age 72, unknown 2.1
2482 Female, age 94, left hemisphere 2.0
Septal nuclei
nTPM: 2.7
2199 Male, age 80, right hemisphere 4.0
2629 Female, age 94, right hemisphere 3.2
2031 Female, age 72, unknown 2.7
2009 Female, age 91, both hemispheres 2.5
2394 Male, age 61, left hemisphere 2.5
2059 Female, age 85, both hemispheres 2.2
1960 Male, age 74, unknown 2.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.4
Samples: 246

Max nTPM: 6.5
Min nTPM: 0.8
Std nTPM: 0.8
Median nTPM: 2.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 5.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 5.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 5.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 4.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 4.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 4.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 4.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 4.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 8.2
Min nTPM: 0.8
Std nTPM: 0.8
Median nTPM: 2.0
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 8.2
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 6.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 5.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 4.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 4.7
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 4.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 4.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 3.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 3.8
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 3.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 3.5
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Brain - Putamen (basal ganglia)
Average nTPM: 2.1
Samples: 205

Max nTPM: 4.9
Min nTPM: 0.9
Std nTPM: 0.6
Median nTPM: 2.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 4.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 4.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 3.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 3.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 3.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 3.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 3.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 3.3
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 3.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 3.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.7
FF:10164-103B2 76 years, female 14.7
Globus pallidus
Scaled Tags Per Million: 14.4
FF:10161-103A8 76 years, female 18.6
FF:10175-103C4 60 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 14.3
FF:10037-101F1 23-56 years, mixed 14.3
Putamen
Scaled Tags Per Million: 15.1
FF:10176-103C5 60 years, female 15.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Caudate
nTPM: 12.5
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.0
Sample A Female 14.3
Sample B Female 11.0
Sample C Male 11.0
Sample D Male 13.7
Putamen
nTPM: 12.8
Samples: 4

Max nTPM: 15.0
Min nTPM: 10.0
Sample A Female 15.0
Sample B Female 14.2
Sample C Male 10.0
Sample D Male 11.8
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.8
Sample A Female 12.0
Sample B Female 12.2
Sample C Male 9.8
Sample D Male 12.9
Ventral pallidum
nTPM: 12.7
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.7
Sample A Female 13.7
Sample B Female 11.9
Sample C Male 11.7
Sample D Male 13.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.5
Min nTPM: 2.0
Sample A Male 2.3
Sample B Male 2.0
Sample C Female 2.5
Sample D Female 2.1
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.2
Sample A Male 1.5
Sample B Male 1.2
Sample C Female 1.6
Sample D Female 1.6
Ventral forebrain
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.4
Sample A Male 2.2
Sample B Male 1.4
Sample C Female 1.4
Sample D Female 2.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
69549671 Antisense, RP_050317_04_D12, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.3
69549671 Antisense, RP_050317_04_D12, Mouse strain C57BL/6J (56 days, male) 0.3

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