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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.1 nTPM
HPA:97.1 nTPM
GTEx:205.7 nTPM
FANTOM5:300.5 Scaled Tags Per Million
Pig:69.7 nTPM
Mouse:194.4 nTPM
Allen mouse:3.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 97.1
Sample id Sample description nTPM
Amygdala
nTPM: 82.5
2814 Male, age 76, right hemisphere 111.1
2517 Female, age 94, left hemisphere 85.2
2514 Male, age 75, right hemisphere 73.5
1987 Female, age 91, left hemisphere 71.7
2695 Female, age 67, right hemisphere 71.1
Basal amygdala
nTPM: 93.6
2685 Female, age 94, left hemisphere 106.2
1955 Male, age 76, both hemispheres 101.7
2243 Female, age 91, right hemisphere 97.8
2110 Male, age 80, left hemisphere 87.0
2609 Male, age 75, right hemisphere 86.8
2827 Female, age 67, right hemisphere 81.9
Central amygdala
nTPM: 94.8
2826 Female, age 94, left hemisphere 122.9
1905 Male, age 76, both hemispheres 104.8
2239 Male, age 80, left hemisphere 91.7
2701 Female, age 91, right hemisphere 84.1
2515 Male, age 75, right hemisphere 70.6
Corticomedial amygdala
nTPM: 87.0
2829 Male, age 80, left hemisphere 95.0
2535 Female, age 67, right hemisphere 92.1
2240 Male, age 76, both hemispheres 91.6
2242 Female, age 91, right hemisphere 86.1
2429 Female, age 94, left hemisphere 84.0
2428 Male, age 75, right hemisphere 72.9
Lateral amygdala
nTPM: 94.7
2534 Female, age 94, left hemisphere 131.9
1883 Male, age 76, both hemispheres 97.9
2255 Female, age 91, right hemisphere 95.9
2256 Male, age 80, left hemisphere 95.9
2516 Male, age 75, right hemisphere 80.5
2830 Female, age 67, right hemisphere 65.9
Stria terminalis, bed nucleus
nTPM: 97.1
1974 Female, age 91, both hemispheres 115.6
2486 Female, age 94, both hemispheres 91.5
2201 Male, age 74, unknown 84.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 205.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 205.7
Samples: 152

Max nTPM: 440.3
Min nTPM: 34.5
Std nTPM: 67.8
Median nTPM: 199.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 440.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 414.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 392.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 363.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 359.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 341.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 333.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 322.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 320.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 313.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 313.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 310.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 304.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 300.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 296.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 291.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 290.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 289.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 284.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 271.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 268.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 266.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 265.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 264.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 264.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 259.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 257.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 256.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 255.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 255.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 253.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 253.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 253.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 245.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 245.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 245.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 245.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 245.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 245.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 243.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 243.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 242.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 241.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 234.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 234.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 234.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 233.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 233.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 232.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 231.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 228.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 228.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 227.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 226.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 225.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 225.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 220.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 219.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 218.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 213.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 213.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 212.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 211.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 210.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 208.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 208.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 207.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 207.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 206.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 204.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 203.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 202.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 202.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 199.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 199.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 199.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 198.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 197.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 196.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 196.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 194.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 194.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 193.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 193.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 192.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 190.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 187.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 185.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 183.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 183.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 182.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 180.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 179.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 179.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 178.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 178.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 175.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 174.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 171.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 171.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 171.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 169.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 169.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 168.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 167.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 163.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 163.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 163.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 162.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 161.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 161.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 155.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 155.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 154.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 150.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 148.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 148.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 147.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 147.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 145.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 143.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 143.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 138.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 137.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 133.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 133.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 131.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 130.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 130.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 127.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 121.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 120.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 118.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 115.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 114.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 111.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 107.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 104.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 96.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 83.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 34.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 300.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 300.5
FF:10151-102I7 76 years, female 300.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.7
Pig sample Sample description nTPM
Amygdala
nTPM: 69.7
Samples: 4

Max nTPM: 97.6
Min nTPM: 58.3
Sample A Female 97.6
Sample B Female 60.2
Sample C Male 58.3
Sample D Male 62.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 194.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 194.4
Samples: 4

Max nTPM: 224.2
Min nTPM: 167.6
Sample A Male 197.0
Sample B Male 188.8
Sample C Female 224.2
Sample D Female 167.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
75214942 Antisense, RP_060427_01_A10, Mouse strain C57BL/6J (56 days, male) 3.4

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