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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:74.8 nTPM
HPA:74.8 nTPM
GTEx:99.7 nTPM
FANTOM5:159.7 Scaled Tags Per Million
Pig:76.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 74.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 67.4
2194 Female, age 79, both hemispheres 83.8
2565 Male, age 75, midline 80.3
1981 Female, age 72, midline 62.4
2816 Male, age 47, midline 60.2
2048 Male, age 55, midline 50.3
Cervical spinal cord, dorsal horn
nTPM: 74.8
1877 Male, age 55, unknown 85.5
2069 Male, age 47, both hemispheres 79.1
2297 Male, age 75, both hemispheres 78.6
2296 Male, age 66, both hemispheres 71.7
2721 Male, age 90, both hemispheres 70.8
2173 Female, age 72, unknown 63.1
Cervical spinal cord, ventral horn
nTPM: 63.1
2068 Male, age 55, unknown 81.3
2820 Female, age 79, both hemispheres 78.8
2480 Male, age 75, both hemispheres 63.9
2809 Male, age 90, both hemispheres 58.5
2295 Male, age 66, both hemispheres 56.2
2098 Female, age 72, unknown 39.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 99.7
Samples: 159

Max nTPM: 200.1
Min nTPM: 45.2
Std nTPM: 29.6
Median nTPM: 91.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 200.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 186.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 185.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 168.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 167.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 162.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 161.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 154.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 153.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 151.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 147.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 147.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 146.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 146.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 145.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 141.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 141.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 136.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 134.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 133.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 132.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 132.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 132.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 131.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 131.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 130.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 128.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 127.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 125.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 125.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 124.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 124.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 124.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 124.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 122.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 121.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 117.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 117.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 116.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 116.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 115.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 114.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 112.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 111.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 110.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 110.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 107.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 106.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 105.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 104.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 104.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 104.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 104.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 103.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 103.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 102.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 101.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 101.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 100.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 99.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 99.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 98.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 97.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 97.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 97.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 96.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 96.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 95.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 94.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 94.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 92.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 91.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 91.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 90.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 90.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 89.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 89.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 89.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 88.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 88.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 88.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 88.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 88.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 88.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 87.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 87.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 86.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 86.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 86.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 85.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 85.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 83.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 82.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 81.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 81.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 81.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 81.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 81.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 80.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 80.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 80.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 79.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 79.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 79.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 79.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 79.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 78.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 78.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 77.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 77.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 77.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 77.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 76.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 76.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 75.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 74.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 74.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 74.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 74.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 74.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 74.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 73.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 73.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 73.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 72.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 72.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 72.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 72.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 71.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 71.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 70.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 69.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 67.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 66.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 66.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 64.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 64.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 64.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 63.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 62.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 62.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 62.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 62.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 61.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 59.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 53.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 52.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 45.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 159.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 159.7
FF:10181-103D1 60 years, female 162.3
FF:10159-103A6 76 years, female 157.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 76.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 76.7
Samples: 4

Max nTPM: 106.1
Min nTPM: 53.7
Sample A Female 106.1
Sample B Female 55.1
Sample C Male 53.7
Sample D Male 92.0
Ventral spinal cord
nTPM: 73.0
Samples: 4

Max nTPM: 80.9
Min nTPM: 64.9
Sample A Female 69.6
Sample B Female 80.9
Sample C Male 76.5
Sample D Male 64.9

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The Human Protein Atlas project is funded
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