BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.9 nTPM
HPA:18.9 nTPM
GTEx:43.4 nTPM
FANTOM5:76.5 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:35.3 nTPM
Allen mouse:17.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028088Antibody HPA028631Antibody HPA030086
Glial cells Not detectedLowLow
Neuronal cells Not detectedLowNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.7
1781 Male, age 74, unknown 17.9
2846 Female, age 79, unknown 15.9
2290 Female, age 72, unknown 15.6
1854 Male, age 80, left hemisphere 15.2
2289 Male, age 61, right hemisphere 14.6
1857 Female, age 85, left hemisphere 14.5
2288 Male, age 75, left hemisphere 13.4
2481 Female, age 94, left hemisphere 10.8
Claustrum
nTPM: 18.5
2645 Female, age 72, unknown 27.8
2284 Female, age 91, both hemispheres 19.8
2568 Male, age 61, both hemispheres 19.5
2198 Male, age 80, both hemispheres 18.0
2196 Female, age 79, unknown 17.3
2491 Male, age 75, both hemispheres 17.3
2392 Female, age 94, both hemispheres 17.1
1956 Male, age 74, unknown 15.7
2292 Female, age 85, both hemispheres 13.7
Globus pallidus, externus
nTPM: 12.7
2646 Male, age 61, right hemisphere 16.4
2567 Female, age 72, unknown 15.7
2395 Male, age 75, both hemispheres 11.6
2772 Female, age 79, unknown 10.4
1996 Male, age 80, right hemisphere 9.2
Globus pallidus, internus
nTPM: 11.3
2111 Female, age 85, right hemisphere 13.3
1818 Male, age 74, unknown 12.5
2483 Female, age 94, right hemisphere 12.0
2566 Female, age 72, unknown 12.0
2287 Male, age 75, right hemisphere 11.0
2037 Male, age 80, right hemisphere 10.4
2778 Female, age 91, both hemispheres 7.9
Nucleus accumbens
nTPM: 14.7
1783 Male, age 74, unknown 19.0
2824 Male, age 61, right hemisphere 17.6
1856 Female, age 91, right hemisphere 15.9
1806 Female, age 85, left hemisphere 15.8
2286 Male, age 75, left hemisphere 13.9
2732 Male, age 80, right hemisphere 12.2
2698 Female, age 72, unknown 11.5
2391 Female, age 94, left hemisphere 11.4
Nucleus basalis of Meynert
nTPM: 15.2
2484 Female, age 94, left hemisphere 16.5
2393 Male, age 80, right hemisphere 15.3
2569 Male, age 61, both hemispheres 14.9
2821 Male, age 75, both hemispheres 14.1
Nucleus of the diagonal band
nTPM: 17.4
2195 Female, age 85, both hemispheres 19.1
2775 Male, age 80, right hemisphere 19.1
2029 Male, age 61, right hemisphere 18.3
1812 Female, age 91, both hemispheres 16.7
1979 Male, age 74, unknown 13.8
Olfactory tubercle
nTPM: 18.9
2487 Female, age 94, left hemisphere 22.1
1998 Female, age 91, both hemispheres 19.2
2856 Male, age 75, right hemisphere 17.7
1846 Male, age 80, right hemisphere 16.5
Putamen
nTPM: 17.6
2647 Male, age 75, left hemisphere 21.7
2489 Female, age 72, unknown 20.2
2466 Female, age 79, unknown 19.3
1829 Male, age 74, unknown 18.5
1838 Male, age 80, right hemisphere 16.4
1937 Female, age 91, right hemisphere 14.4
2482 Female, age 94, left hemisphere 12.8
Septal nuclei
nTPM: 16.0
1960 Male, age 74, unknown 20.6
2009 Female, age 91, both hemispheres 17.0
2059 Female, age 85, both hemispheres 15.7
2394 Male, age 61, left hemisphere 15.2
2629 Female, age 94, right hemisphere 15.1
2031 Female, age 72, unknown 14.3
2199 Male, age 80, right hemisphere 14.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 71.6
Min nTPM: 22.7
Std nTPM: 8.6
Median nTPM: 42.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 71.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 66.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 65.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 65.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 61.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 61.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 61.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 60.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 59.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 58.0
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.4
Samples: 246

Max nTPM: 64.2
Min nTPM: 17.8
Std nTPM: 7.7
Median nTPM: 43.7
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 64.2
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 63.9
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 60.9
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 60.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 59.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 58.6
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 58.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 58.2
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 57.3
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 57.1
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 56.4
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 43.4
Samples: 205

Max nTPM: 65.4
Min nTPM: 24.8
Std nTPM: 7.3
Median nTPM: 42.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 65.4
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 62.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 62.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 59.9
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 59.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 59.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 59.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 58.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 57.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 56.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 56.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.1
FF:10164-103B2 76 years, female 71.1
Globus pallidus
Scaled Tags Per Million: 53.8
FF:10175-103C4 60 years, female 56.8
FF:10161-103A8 76 years, female 50.7
Nucleus accumbens
Scaled Tags Per Million: 76.5
FF:10037-101F1 23-56 years, mixed 76.5
Putamen
Scaled Tags Per Million: 62.0
FF:10176-103C5 60 years, female 62.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Caudate
nTPM: 21.7
Samples: 4

Max nTPM: 26.5
Min nTPM: 16.5
Sample A Female 16.5
Sample B Female 23.1
Sample C Male 26.5
Sample D Male 20.5
Putamen
nTPM: 18.9
Samples: 4

Max nTPM: 22.6
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 19.2
Sample C Male 20.8
Sample D Male 22.6
Septum
nTPM: 15.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 12.2
Sample A Female 17.9
Sample B Female 17.8
Sample C Male 12.9
Sample D Male 12.2
Ventral pallidum
nTPM: 18.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 17.6
Sample A Female 17.6
Sample B Female 18.9
Sample C Male 20.2
Sample D Male 18.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.3
Samples: 4

Max nTPM: 36.5
Min nTPM: 33.5
Sample A Male 35.1
Sample B Male 33.5
Sample C Female 36.5
Sample D Female 36.2
Septum
nTPM: 24.5
Samples: 4

Max nTPM: 27.7
Min nTPM: 21.4
Sample A Male 27.7
Sample B Male 22.0
Sample C Female 21.4
Sample D Female 27.0
Ventral forebrain
nTPM: 34.4
Samples: 4

Max nTPM: 36.5
Min nTPM: 32.4
Sample A Male 35.3
Sample B Male 33.4
Sample C Female 32.4
Sample D Female 36.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 17.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 17.2
68410554 Antisense, RP_041214_02_B06, Mouse strain C57BL/6J (56 days, male) 17.2
Pallidum
Expression energy: 15.9
68410554 Antisense, RP_041214_02_B06, Mouse strain C57BL/6J (56 days, male) 15.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.