MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA:18.8 nTPM
GTEx:13.7 nTPM
FANTOM5:36.6 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:12.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.6
2019 Male, age 18, unknown 28.3
2666 Male, age 74, left hemisphere 20.4
2828 Female, age 72, unknown 20.1
1827 Male, age 72, unknown 19.1
1870 Female, age 42, unknown 18.1
1830 Male, age 51, unknown 15.5
2411 Female, age 72, unknown 14.8
2586 Male, age 75, left hemisphere 14.6
1833 Male, age 53, unknown 13.9
2219 Male, age 76, both hemispheres 11.0
Dorsal raphe nucleus
nTPM: 16.0
1828 Male, age 53, unknown 17.3
2298 Female, age 72, unknown 16.4
2016 Female, age 72, unknown 16.0
2750 Male, age 76, both hemispheres 15.7
2047 Male, age 72, unknown 14.7
Inferior colliculus
nTPM: 15.9
2097 Female, age 72, unknown 19.8
1890 Male, age 53, unknown 15.8
1848 Female, age 42, unknown 15.5
2849 Male, age 72, unknown 12.7
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Pedunculopontine tegmental nucleus
nTPM: 13.7
2334 Male, age 80, both hemispheres 15.2
2338 Male, age 61, both hemispheres 13.6
1921 Female, age 85, both hemispheres 12.1
Periaquaductal grey, anterior
nTPM: 17.4
1795 Male, age 51, unknown 19.0
1947 Male, age 18, unknown 17.2
2502 Female, age 75, unknown 16.0
Periaquaductal grey, dorsal
nTPM: 16.0
2850 Male, age 76, both hemispheres 17.7
1831 Male, age 72, unknown 16.9
2464 Female, age 72, unknown 15.9
1840 Male, age 53, unknown 13.6
Periaquaductal grey, lateral
nTPM: 14.4
2140 Male, age 76, both hemispheres 15.6
2053 Male, age 18, unknown 14.7
2272 Male, age 74, both hemispheres 13.1
Pretectal area
nTPM: 16.9
1817 Female, age 42, unknown 24.1
2007 Male, age 72, unknown 21.0
1815 Male, age 53, unknown 19.1
1944 Female, age 72, unknown 18.3
1816 Male, age 51, unknown 17.2
2667 Female, age 75, unknown 16.3
2273 Male, age 74, both hemispheres 15.8
2224 Female, age 72, unknown 15.5
2316 Male, age 76, right hemisphere 15.4
2825 Male, age 18, unknown 12.1
2407 Male, age 75, both hemispheres 10.6
Red nucleus
nTPM: 18.6
1954 Female, age 42, unknown 22.0
1821 Female, age 72, unknown 20.8
2785 Male, age 18, unknown 20.8
1865 Male, age 51, unknown 20.1
2823 Male, age 76, right hemisphere 19.9
1904 Male, age 53, unknown 19.4
2503 Female, age 72, unknown 19.4
2725 Female, age 75, unknown 17.8
2588 Male, age 74, left hemisphere 17.5
2769 Male, age 72, unknown 17.0
2227 Male, age 72, unknown 16.6
2584 Male, age 75, left hemisphere 12.1
Substantia nigra
nTPM: 14.1
2665 Male, age 74, both hemispheres 20.3
1889 Female, age 72, unknown 17.0
2409 Female, age 72, unknown 14.9
1851 Male, age 51, unknown 13.8
2583 Male, age 75, right hemisphere 13.4
2590 Female, age 75, unknown 13.4
1916 Female, age 42, unknown 13.0
1941 Male, age 53, unknown 13.0
2241 Male, age 72, unknown 11.9
2699 Male, age 18, unknown 10.1
Superior colliculus
nTPM: 16.3
1995 Male, age 72, unknown 20.1
2668 Female, age 75, unknown 18.6
1913 Female, age 42, unknown 18.1
1796 Male, age 53, unknown 18.0
2087 Female, age 72, unknown 17.3
2587 Male, age 74, left hemisphere 16.7
2261 Male, age 18, unknown 16.1
1839 Male, age 51, unknown 13.7
1895 Male, age 76, right hemisphere 13.6
2664 Male, age 75, both hemispheres 11.0
Ventral tegmental area
nTPM: 14.6
2410 Female, age 72, unknown 15.3
1942 Male, age 51, unknown 15.1
2021 Male, age 53, unknown 14.9
2223 Female, age 72, unknown 14.9
2218 Male, age 76, both hemispheres 14.3
1915 Female, age 42, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 139

Max nTPM: 51.9
Min nTPM: 3.5
Std nTPM: 6.9
Median nTPM: 12.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 51.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 42.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 39.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 35.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 30.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 24.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 22.6
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 22.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 22.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.6
FF:10158-103A5 76 years, female 36.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.9
Pig sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 48.0
Min nTPM: 33.5
Sample A Female 48.0
Sample B Female 37.0
Sample C Male 33.5
Sample D Male 34.1
Periaqueductal gray
nTPM: 33.0
Samples: 3

Max nTPM: 37.0
Min nTPM: 27.7
Sample B Female 37.0
Sample C Male 34.4
Sample D Male 27.7
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 40.8
Min nTPM: 37.7
Sample A Female 37.7
Sample B Female 39.0
Sample C Male 38.3
Sample D Male 40.8
Superior colliculi
nTPM: 35.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 31.1
Sample A Female 39.6
Sample B Female 37.7
Sample C Male 31.1
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 14.5
Min nTPM: 12.4
Sample A Male 12.4
Sample B Male 14.5
Sample C Female 12.6
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68919830 Antisense, RP_050301_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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