BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:56.0 nTPM
HPA:56.0 nTPM
GTEx:62.3 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Mouse:96.9 nTPM
Allen mouse:10.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA024032
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.1
2846 Female, age 79, unknown 57.3
2481 Female, age 94, left hemisphere 56.9
2290 Female, age 72, unknown 55.1
1857 Female, age 85, left hemisphere 55.0
2288 Male, age 75, left hemisphere 54.6
1854 Male, age 80, left hemisphere 54.5
1781 Male, age 74, unknown 54.1
2289 Male, age 61, right hemisphere 53.4
Claustrum
nTPM: 55.2
2198 Male, age 80, both hemispheres 58.3
2568 Male, age 61, both hemispheres 56.3
1956 Male, age 74, unknown 55.7
2491 Male, age 75, both hemispheres 55.4
2196 Female, age 79, unknown 55.2
2284 Female, age 91, both hemispheres 54.8
2292 Female, age 85, both hemispheres 54.7
2645 Female, age 72, unknown 53.6
2392 Female, age 94, both hemispheres 52.8
Globus pallidus, externus
nTPM: 55.0
2772 Female, age 79, unknown 57.0
2395 Male, age 75, both hemispheres 56.3
1996 Male, age 80, right hemisphere 55.7
2646 Male, age 61, right hemisphere 53.3
2567 Female, age 72, unknown 52.6
Globus pallidus, internus
nTPM: 54.7
2287 Male, age 75, right hemisphere 58.7
2483 Female, age 94, right hemisphere 56.2
2778 Female, age 91, both hemispheres 54.6
1818 Male, age 74, unknown 54.4
2566 Female, age 72, unknown 53.9
2037 Male, age 80, right hemisphere 53.6
2111 Female, age 85, right hemisphere 51.6
Nucleus accumbens
nTPM: 55.3
1856 Female, age 91, right hemisphere 58.2
2698 Female, age 72, unknown 56.7
2391 Female, age 94, left hemisphere 56.1
2286 Male, age 75, left hemisphere 55.8
1783 Male, age 74, unknown 55.1
1806 Female, age 85, left hemisphere 54.1
2824 Male, age 61, right hemisphere 53.5
2732 Male, age 80, right hemisphere 52.6
Nucleus basalis of Meynert
nTPM: 54.8
2484 Female, age 94, left hemisphere 56.2
2821 Male, age 75, both hemispheres 56.2
2393 Male, age 80, right hemisphere 54.4
2569 Male, age 61, both hemispheres 52.3
Nucleus of the diagonal band
nTPM: 56.0
1812 Female, age 91, both hemispheres 58.1
2775 Male, age 80, right hemisphere 56.4
1979 Male, age 74, unknown 55.8
2029 Male, age 61, right hemisphere 55.0
2195 Female, age 85, both hemispheres 54.8
Olfactory tubercle
nTPM: 54.8
1846 Male, age 80, right hemisphere 57.0
1998 Female, age 91, both hemispheres 55.1
2856 Male, age 75, right hemisphere 54.6
2487 Female, age 94, left hemisphere 52.8
Putamen
nTPM: 54.6
1838 Male, age 80, right hemisphere 56.7
2466 Female, age 79, unknown 56.0
2482 Female, age 94, left hemisphere 55.5
1829 Male, age 74, unknown 54.2
1937 Female, age 91, right hemisphere 53.6
2489 Female, age 72, unknown 53.2
2647 Male, age 75, left hemisphere 53.2
Septal nuclei
nTPM: 54.7
1960 Male, age 74, unknown 57.9
2031 Female, age 72, unknown 57.9
2059 Female, age 85, both hemispheres 54.6
2009 Female, age 91, both hemispheres 54.3
2629 Female, age 94, right hemisphere 53.7
2199 Male, age 80, right hemisphere 52.7
2394 Male, age 61, left hemisphere 51.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.6
Samples: 246

Max nTPM: 113.4
Min nTPM: 27.6
Std nTPM: 13.9
Median nTPM: 55.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 113.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 110.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 108.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 100.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 98.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 90.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 88.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 86.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 86.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 62.2
Samples: 246

Max nTPM: 104.3
Min nTPM: 27.9
Std nTPM: 12.5
Median nTPM: 61.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 104.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 96.9
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 94.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 94.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 93.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 91.6
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 90.8
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 87.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 87.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 86.7
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 85.8
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Brain - Putamen (basal ganglia)
Average nTPM: 62.3
Samples: 205

Max nTPM: 101.3
Min nTPM: 30.9
Std nTPM: 13.3
Median nTPM: 60.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 101.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 97.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 97.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 95.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 91.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 89.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 87.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 87.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 87.1
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 86.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 86.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.6
FF:10164-103B2 76 years, female 84.6
Globus pallidus
Scaled Tags Per Million: 81.7
FF:10175-103C4 60 years, female 110.5
FF:10161-103A8 76 years, female 52.9
Nucleus accumbens
Scaled Tags Per Million: 57.0
FF:10037-101F1 23-56 years, mixed 57.0
Putamen
Scaled Tags Per Million: 99.3
FF:10176-103C5 60 years, female 99.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.6
Samples: 4

Max nTPM: 89.8
Min nTPM: 78.9
Sample A Male 85.1
Sample B Male 89.8
Sample C Female 80.4
Sample D Female 78.9
Septum
nTPM: 96.9
Samples: 4

Max nTPM: 104.0
Min nTPM: 91.7
Sample A Male 91.7
Sample B Male 104.0
Sample C Female 92.6
Sample D Female 99.1
Ventral forebrain
nTPM: 86.9
Samples: 4

Max nTPM: 91.4
Min nTPM: 80.0
Sample A Male 80.0
Sample B Male 88.0
Sample C Female 91.4
Sample D Female 88.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 10.0
69014949 Antisense, RP_050310_02_A09, Mouse strain C57BL/6J (56 days, male) 10.0
Pallidum
Expression energy: 10.5
69014949 Antisense, RP_050310_02_A09, Mouse strain C57BL/6J (56 days, male) 10.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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