BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:37.3 nTPM
HPA:37.3 nTPM
GTEx:73.4 nTPM
FANTOM5:168.2 Scaled Tags Per Million
Pig:42.9 nTPM
Mouse:62.6 nTPM
Allen mouse:3.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA006632
Glial cells Low
Neuronal cells Low

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 37.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.5
2481 Female, age 94, left hemisphere 39.8
2846 Female, age 79, unknown 37.3
1781 Male, age 74, unknown 36.5
2288 Male, age 75, left hemisphere 36.3
1854 Male, age 80, left hemisphere 36.0
2290 Female, age 72, unknown 35.9
1857 Female, age 85, left hemisphere 35.6
2289 Male, age 61, right hemisphere 35.0
Claustrum
nTPM: 33.7
2196 Female, age 79, unknown 35.1
2292 Female, age 85, both hemispheres 34.6
1956 Male, age 74, unknown 34.4
2392 Female, age 94, both hemispheres 33.9
2198 Male, age 80, both hemispheres 33.7
2491 Male, age 75, both hemispheres 33.7
2645 Female, age 72, unknown 32.6
2284 Female, age 91, both hemispheres 32.5
2568 Male, age 61, both hemispheres 32.5
Globus pallidus, externus
nTPM: 36.6
1996 Male, age 80, right hemisphere 40.2
2772 Female, age 79, unknown 38.8
2395 Male, age 75, both hemispheres 36.8
2646 Male, age 61, right hemisphere 34.5
2567 Female, age 72, unknown 32.8
Globus pallidus, internus
nTPM: 37.3
2037 Male, age 80, right hemisphere 38.4
2778 Female, age 91, both hemispheres 38.3
2483 Female, age 94, right hemisphere 37.8
2111 Female, age 85, right hemisphere 37.3
2287 Male, age 75, right hemisphere 37.3
1818 Male, age 74, unknown 37.2
2566 Female, age 72, unknown 34.4
Nucleus accumbens
nTPM: 35.9
2286 Male, age 75, left hemisphere 37.3
2391 Female, age 94, left hemisphere 37.1
1806 Female, age 85, left hemisphere 36.7
2698 Female, age 72, unknown 36.3
2732 Male, age 80, right hemisphere 35.6
1783 Male, age 74, unknown 35.2
1856 Female, age 91, right hemisphere 35.1
2824 Male, age 61, right hemisphere 33.6
Nucleus basalis of Meynert
nTPM: 35.7
2484 Female, age 94, left hemisphere 36.6
2569 Male, age 61, both hemispheres 35.6
2821 Male, age 75, both hemispheres 35.5
2393 Male, age 80, right hemisphere 35.1
Nucleus of the diagonal band
nTPM: 34.5
1812 Female, age 91, both hemispheres 36.2
1979 Male, age 74, unknown 34.7
2029 Male, age 61, right hemisphere 34.2
2775 Male, age 80, right hemisphere 33.8
2195 Female, age 85, both hemispheres 33.6
Olfactory tubercle
nTPM: 33.9
1846 Male, age 80, right hemisphere 34.7
2856 Male, age 75, right hemisphere 34.1
1998 Female, age 91, both hemispheres 33.7
2487 Female, age 94, left hemisphere 32.9
Putamen
nTPM: 35.4
2482 Female, age 94, left hemisphere 38.8
2466 Female, age 79, unknown 36.1
1937 Female, age 91, right hemisphere 35.4
1838 Male, age 80, right hemisphere 35.0
1829 Male, age 74, unknown 34.9
2489 Female, age 72, unknown 34.6
2647 Male, age 75, left hemisphere 33.4
Septal nuclei
nTPM: 35.0
2394 Male, age 61, left hemisphere 36.1
2199 Male, age 80, right hemisphere 35.9
2031 Female, age 72, unknown 35.0
1960 Male, age 74, unknown 34.8
2009 Female, age 91, both hemispheres 34.5
2629 Female, age 94, right hemisphere 34.4
2059 Female, age 85, both hemispheres 34.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 73.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.0
Samples: 246

Max nTPM: 177.3
Min nTPM: 30.6
Std nTPM: 18.8
Median nTPM: 65.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 177.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 149.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 139.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 116.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 115.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 114.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 114.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 109.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 108.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 104.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 100.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 65.3
Samples: 246

Max nTPM: 154.7
Min nTPM: 34.9
Std nTPM: 20.1
Median nTPM: 60.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 154.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 137.4
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 128.5
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 126.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 124.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 121.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 120.4
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 117.5
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 113.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 113.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 110.4
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Brain - Putamen (basal ganglia)
Average nTPM: 73.4
Samples: 205

Max nTPM: 146.6
Min nTPM: 36.5
Std nTPM: 20.3
Median nTPM: 68.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 146.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 136.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 131.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 126.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 124.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 124.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 123.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 121.2
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 118.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 116.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 113.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.7
FF:10164-103B2 76 years, female 99.7
Globus pallidus
Scaled Tags Per Million: 168.2
FF:10175-103C4 60 years, female 191.8
FF:10161-103A8 76 years, female 144.7
Nucleus accumbens
Scaled Tags Per Million: 58.5
FF:10037-101F1 23-56 years, mixed 58.5
Putamen
Scaled Tags Per Million: 70.0
FF:10176-103C5 60 years, female 70.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.9
Pig sample Sample description nTPM
Caudate
nTPM: 31.6
Samples: 4

Max nTPM: 35.1
Min nTPM: 29.3
Sample A Female 35.1
Sample B Female 30.5
Sample C Male 29.3
Sample D Male 31.5
Putamen
nTPM: 29.6
Samples: 4

Max nTPM: 39.4
Min nTPM: 23.2
Sample A Female 39.4
Sample B Female 23.2
Sample C Male 26.4
Sample D Male 29.3
Septum
nTPM: 42.9
Samples: 4

Max nTPM: 48.5
Min nTPM: 35.8
Sample A Female 47.8
Sample B Female 35.8
Sample C Male 48.5
Sample D Male 39.3
Ventral pallidum
nTPM: 34.5
Samples: 4

Max nTPM: 36.4
Min nTPM: 33.2
Sample A Female 36.4
Sample B Female 35.3
Sample C Male 33.2
Sample D Male 33.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 42.7
Samples: 4

Max nTPM: 47.4
Min nTPM: 37.3
Sample A Male 45.3
Sample B Male 40.6
Sample C Female 37.3
Sample D Female 47.4
Septum
nTPM: 62.6
Samples: 4

Max nTPM: 65.3
Min nTPM: 60.3
Sample A Male 65.3
Sample B Male 63.2
Sample C Female 61.5
Sample D Female 60.3
Ventral forebrain
nTPM: 57.4
Samples: 4

Max nTPM: 63.7
Min nTPM: 50.5
Sample A Male 59.4
Sample B Male 56.0
Sample C Female 63.7
Sample D Female 50.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
76115739 Antisense, RP_060620_02_C07, Mouse strain C57BL/6J (56 days, male) 4.1
69816715 Antisense, RP_050510_01_G02, Mouse strain C57BL/6J (56 days, male) 2.0
Pallidum
Expression energy: 3.9
76115739 Antisense, RP_060620_02_C07, Mouse strain C57BL/6J (56 days, male) 5.5
69816715 Antisense, RP_050510_01_G02, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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