MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:37.6 nTPM
HPA:37.6 nTPM
GTEx:82.6 nTPM
FANTOM5:147.7 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:55.5 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.8
1870 Female, age 42, unknown 36.9
2411 Female, age 72, unknown 35.4
2828 Female, age 72, unknown 35.4
1830 Male, age 51, unknown 35.1
1833 Male, age 53, unknown 35.0
2019 Male, age 18, unknown 34.9
2666 Male, age 74, left hemisphere 34.6
1827 Male, age 72, unknown 34.4
2219 Male, age 76, both hemispheres 34.3
2586 Male, age 75, left hemisphere 32.3
Dorsal raphe nucleus
nTPM: 36.4
2298 Female, age 72, unknown 37.2
2750 Male, age 76, both hemispheres 37.1
2016 Female, age 72, unknown 36.7
1828 Male, age 53, unknown 36.1
2047 Male, age 72, unknown 34.8
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 35.9
1848 Female, age 42, unknown 35.2
1890 Male, age 53, unknown 34.8
2849 Male, age 72, unknown 33.6
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Pedunculopontine tegmental nucleus
nTPM: 37.6
2338 Male, age 61, both hemispheres 39.5
2334 Male, age 80, both hemispheres 37.4
1921 Female, age 85, both hemispheres 35.9
Periaquaductal grey, anterior
nTPM: 34.9
2502 Female, age 75, unknown 35.3
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 34.5
Periaquaductal grey, dorsal
nTPM: 35.7
1831 Male, age 72, unknown 36.1
2464 Female, age 72, unknown 35.7
1840 Male, age 53, unknown 35.6
2850 Male, age 76, both hemispheres 35.4
Periaquaductal grey, lateral
nTPM: 35.6
2272 Male, age 74, both hemispheres 36.5
2053 Male, age 18, unknown 35.4
2140 Male, age 76, both hemispheres 34.9
Pretectal area
nTPM: 35.3
2667 Female, age 75, unknown 36.6
2273 Male, age 74, both hemispheres 36.2
2316 Male, age 76, right hemisphere 36.2
2224 Female, age 72, unknown 36.0
2825 Male, age 18, unknown 35.6
1817 Female, age 42, unknown 35.2
1815 Male, age 53, unknown 34.9
1944 Female, age 72, unknown 34.6
1816 Male, age 51, unknown 34.5
2007 Male, age 72, unknown 34.3
2407 Male, age 75, both hemispheres 34.3
Red nucleus
nTPM: 35.7
1821 Female, age 72, unknown 37.5
1904 Male, age 53, unknown 36.9
1954 Female, age 42, unknown 36.9
2503 Female, age 72, unknown 36.6
2823 Male, age 76, right hemisphere 36.3
2725 Female, age 75, unknown 36.2
2769 Male, age 72, unknown 36.1
1865 Male, age 51, unknown 35.8
2227 Male, age 72, unknown 35.7
2785 Male, age 18, unknown 34.4
2588 Male, age 74, left hemisphere 33.5
2584 Male, age 75, left hemisphere 32.8
Substantia nigra
nTPM: 36.4
2699 Male, age 18, unknown 38.3
1916 Female, age 42, unknown 38.2
2241 Male, age 72, unknown 38.0
1851 Male, age 51, unknown 37.8
2409 Female, age 72, unknown 37.2
2665 Male, age 74, both hemispheres 36.7
2590 Female, age 75, unknown 35.4
1889 Female, age 72, unknown 35.2
1941 Male, age 53, unknown 35.0
2583 Male, age 75, right hemisphere 32.7
Superior colliculus
nTPM: 35.2
1995 Male, age 72, unknown 37.2
1913 Female, age 42, unknown 36.6
1895 Male, age 76, right hemisphere 36.2
1796 Male, age 53, unknown 35.5
2587 Male, age 74, left hemisphere 35.1
1839 Male, age 51, unknown 35.0
2087 Female, age 72, unknown 35.0
2261 Male, age 18, unknown 34.3
2668 Female, age 75, unknown 33.8
2664 Male, age 75, both hemispheres 32.7
Ventral tegmental area
nTPM: 36.4
1915 Female, age 42, unknown 37.4
2218 Male, age 76, both hemispheres 37.2
2021 Male, age 53, unknown 36.4
2410 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 35.9
2223 Female, age 72, unknown 35.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 82.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.6
Samples: 139

Max nTPM: 156.0
Min nTPM: 43.6
Std nTPM: 18.1
Median nTPM: 80.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 156.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 148.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 140.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 124.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 123.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 115.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 114.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 113.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 110.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 108.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 107.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.7
FF:10158-103A5 76 years, female 147.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Midbrain
nTPM: 40.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 30.5
Sample A Female 53.2
Sample B Female 43.2
Sample C Male 30.5
Sample D Male 36.1
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 48.7
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 48.7
Sample D Male 44.0
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 60.3
Min nTPM: 34.0
Sample A Female 60.3
Sample B Female 45.2
Sample C Male 46.1
Sample D Male 34.0
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 51.4
Min nTPM: 32.2
Sample A Female 51.4
Sample B Female 44.3
Sample C Male 32.2
Sample D Male 40.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 67.8
Min nTPM: 47.0
Sample A Male 67.8
Sample B Male 51.3
Sample C Female 47.0
Sample D Female 56.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
76115739 Antisense, RP_060620_02_C07, Mouse strain C57BL/6J (56 days, male) 4.8
69816715 Antisense, RP_050510_01_G02, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.