MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.2 nTPM
HPA:28.2 nTPM
GTEx:33.7 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:21.5 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
2586 Male, age 75, left hemisphere 34.0
2219 Male, age 76, both hemispheres 28.9
2828 Female, age 72, unknown 27.6
2411 Female, age 72, unknown 26.7
2666 Male, age 74, left hemisphere 25.2
1827 Male, age 72, unknown 25.0
2019 Male, age 18, unknown 24.4
1833 Male, age 53, unknown 24.1
1870 Female, age 42, unknown 23.5
1830 Male, age 51, unknown 21.8
Dorsal raphe nucleus
nTPM: 27.2
2298 Female, age 72, unknown 29.9
2047 Male, age 72, unknown 29.1
1828 Male, age 53, unknown 27.3
2750 Male, age 76, both hemispheres 26.1
2016 Female, age 72, unknown 23.5
Inferior colliculus
nTPM: 23.7
1848 Female, age 42, unknown 24.7
1890 Male, age 53, unknown 24.0
2849 Male, age 72, unknown 23.4
2097 Female, age 72, unknown 22.9
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Pedunculopontine tegmental nucleus
nTPM: 24.7
2334 Male, age 80, both hemispheres 27.2
1921 Female, age 85, both hemispheres 26.0
2338 Male, age 61, both hemispheres 20.9
Periaquaductal grey, anterior
nTPM: 24.6
1795 Male, age 51, unknown 25.8
1947 Male, age 18, unknown 24.7
2502 Female, age 75, unknown 23.3
Periaquaductal grey, dorsal
nTPM: 21.8
1840 Male, age 53, unknown 23.8
2464 Female, age 72, unknown 23.1
1831 Male, age 72, unknown 21.5
2850 Male, age 76, both hemispheres 19.0
Periaquaductal grey, lateral
nTPM: 19.3
2053 Male, age 18, unknown 21.1
2272 Male, age 74, both hemispheres 19.4
2140 Male, age 76, both hemispheres 17.6
Pretectal area
nTPM: 24.9
1816 Male, age 51, unknown 29.0
1817 Female, age 42, unknown 28.9
2007 Male, age 72, unknown 28.2
1944 Female, age 72, unknown 27.6
2224 Female, age 72, unknown 26.0
2667 Female, age 75, unknown 26.0
1815 Male, age 53, unknown 24.5
2825 Male, age 18, unknown 24.1
2407 Male, age 75, both hemispheres 20.0
2273 Male, age 74, both hemispheres 19.8
2316 Male, age 76, right hemisphere 19.4
Red nucleus
nTPM: 24.2
2503 Female, age 72, unknown 27.6
2588 Male, age 74, left hemisphere 26.6
2725 Female, age 75, unknown 25.6
1821 Female, age 72, unknown 25.3
1954 Female, age 42, unknown 24.2
2769 Male, age 72, unknown 24.2
2785 Male, age 18, unknown 23.8
2227 Male, age 72, unknown 23.4
1904 Male, age 53, unknown 23.3
2584 Male, age 75, left hemisphere 22.9
1865 Male, age 51, unknown 22.5
2823 Male, age 76, right hemisphere 21.4
Substantia nigra
nTPM: 28.2
1916 Female, age 42, unknown 36.3
1851 Male, age 51, unknown 30.3
2665 Male, age 74, both hemispheres 30.1
1889 Female, age 72, unknown 28.8
2699 Male, age 18, unknown 27.9
1941 Male, age 53, unknown 27.8
2241 Male, age 72, unknown 26.8
2409 Female, age 72, unknown 25.8
2583 Male, age 75, right hemisphere 24.5
2590 Female, age 75, unknown 23.7
Superior colliculus
nTPM: 23.3
2087 Female, age 72, unknown 26.4
2668 Female, age 75, unknown 25.4
1796 Male, age 53, unknown 25.3
2664 Male, age 75, both hemispheres 25.2
1839 Male, age 51, unknown 23.0
2261 Male, age 18, unknown 22.7
2587 Male, age 74, left hemisphere 21.8
1913 Female, age 42, unknown 21.5
1995 Male, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 20.3
Ventral tegmental area
nTPM: 26.8
1915 Female, age 42, unknown 30.2
2410 Female, age 72, unknown 29.9
2218 Male, age 76, both hemispheres 25.9
1942 Male, age 51, unknown 25.7
2223 Female, age 72, unknown 24.7
2021 Male, age 53, unknown 24.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.7
Samples: 139

Max nTPM: 80.3
Min nTPM: 12.6
Std nTPM: 11.4
Median nTPM: 32.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 80.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 65.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 65.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 63.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 61.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 54.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 53.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 51.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.7
FF:10158-103A5 76 years, female 24.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.9
Pig sample Sample description nTPM
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 25.1
Sample A Female 40.8
Sample B Female 25.1
Sample C Male 39.3
Sample D Male 26.4
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 25.7
Min nTPM: 18.8
Sample B Female 21.1
Sample C Male 25.7
Sample D Male 18.8
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 36.0
Min nTPM: 26.5
Sample A Female 35.3
Sample B Female 26.5
Sample C Male 36.0
Sample D Male 27.2
Superior colliculi
nTPM: 32.5
Samples: 4

Max nTPM: 33.1
Min nTPM: 30.9
Sample A Female 33.1
Sample B Female 33.1
Sample C Male 33.0
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 20.2
Sample A Male 21.6
Sample B Male 20.2
Sample C Female 21.6
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
2119 Antisense, RP_040407_02_E07, Mouse strain C57BL/6J (56 days, male) 3.2
2120 Antisense, RP_040407_02_E07, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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