MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:88.5 nTPM
HPA:88.5 nTPM
GTEx:108.0 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:76.6 nTPM
Mouse:315.9 nTPM
Allen mouse:14.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.6
2219 Male, age 76, both hemispheres 68.6
2411 Female, age 72, unknown 66.4
1827 Male, age 72, unknown 66.1
2666 Male, age 74, left hemisphere 60.5
2828 Female, age 72, unknown 59.0
2019 Male, age 18, unknown 54.3
1870 Female, age 42, unknown 49.7
1833 Male, age 53, unknown 47.5
1830 Male, age 51, unknown 43.0
2586 Male, age 75, left hemisphere 41.4
Dorsal raphe nucleus
nTPM: 66.0
2298 Female, age 72, unknown 86.1
2750 Male, age 76, both hemispheres 76.8
2047 Male, age 72, unknown 70.5
1828 Male, age 53, unknown 57.4
2016 Female, age 72, unknown 39.2
Inferior colliculus
nTPM: 48.9
2097 Female, age 72, unknown 60.9
1848 Female, age 42, unknown 48.3
1890 Male, age 53, unknown 44.2
2849 Male, age 72, unknown 42.1
Median raphe nucleus
nTPM: 88.5
2220 Male, age 76, midline 88.5
Pedunculopontine tegmental nucleus
nTPM: 62.3
2334 Male, age 80, both hemispheres 72.4
1921 Female, age 85, both hemispheres 66.9
2338 Male, age 61, both hemispheres 47.5
Periaquaductal grey, anterior
nTPM: 65.9
1795 Male, age 51, unknown 71.9
1947 Male, age 18, unknown 66.5
2502 Female, age 75, unknown 59.3
Periaquaductal grey, dorsal
nTPM: 45.6
1840 Male, age 53, unknown 49.6
1831 Male, age 72, unknown 47.2
2850 Male, age 76, both hemispheres 42.9
2464 Female, age 72, unknown 42.5
Periaquaductal grey, lateral
nTPM: 41.9
2053 Male, age 18, unknown 43.9
2272 Male, age 74, both hemispheres 42.6
2140 Male, age 76, both hemispheres 39.3
Pretectal area
nTPM: 61.2
1816 Male, age 51, unknown 87.5
1944 Female, age 72, unknown 85.9
2667 Female, age 75, unknown 75.9
2007 Male, age 72, unknown 75.8
1817 Female, age 42, unknown 74.2
1815 Male, age 53, unknown 62.7
2224 Female, age 72, unknown 58.4
2825 Male, age 18, unknown 47.4
2316 Male, age 76, right hemisphere 37.0
2273 Male, age 74, both hemispheres 36.6
2407 Male, age 75, both hemispheres 31.6
Red nucleus
nTPM: 46.7
1821 Female, age 72, unknown 56.5
2785 Male, age 18, unknown 52.8
2584 Male, age 75, left hemisphere 51.0
1954 Female, age 42, unknown 50.4
2227 Male, age 72, unknown 46.3
2769 Male, age 72, unknown 45.5
2503 Female, age 72, unknown 45.3
1904 Male, age 53, unknown 43.9
2588 Male, age 74, left hemisphere 43.8
2725 Female, age 75, unknown 41.8
1865 Male, age 51, unknown 41.7
2823 Male, age 76, right hemisphere 41.6
Substantia nigra
nTPM: 76.4
1916 Female, age 42, unknown 116.9
2665 Male, age 74, both hemispheres 101.0
1941 Male, age 53, unknown 88.7
1851 Male, age 51, unknown 88.0
1889 Female, age 72, unknown 75.7
2409 Female, age 72, unknown 74.3
2241 Male, age 72, unknown 65.5
2699 Male, age 18, unknown 58.1
2590 Female, age 75, unknown 50.4
2583 Male, age 75, right hemisphere 45.4
Superior colliculus
nTPM: 52.1
2087 Female, age 72, unknown 78.3
1796 Male, age 53, unknown 68.6
2668 Female, age 75, unknown 66.7
2261 Male, age 18, unknown 61.7
1895 Male, age 76, right hemisphere 50.6
1913 Female, age 42, unknown 43.8
1839 Male, age 51, unknown 43.6
2587 Male, age 74, left hemisphere 40.0
1995 Male, age 72, unknown 36.1
2664 Male, age 75, both hemispheres 31.6
Ventral tegmental area
nTPM: 72.1
2410 Female, age 72, unknown 101.7
2218 Male, age 76, both hemispheres 92.8
1915 Female, age 42, unknown 80.9
1942 Male, age 51, unknown 57.1
2021 Male, age 53, unknown 50.6
2223 Female, age 72, unknown 49.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 108.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 108.0
Samples: 139

Max nTPM: 449.8
Min nTPM: 14.6
Std nTPM: 91.4
Median nTPM: 75.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 449.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 449.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 373.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 358.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 305.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 298.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 290.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 286.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 280.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 270.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 251.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.7
FF:10158-103A5 76 years, female 23.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.6
Pig sample Sample description nTPM
Midbrain
nTPM: 64.6
Samples: 4

Max nTPM: 120.6
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 50.2
Sample C Male 120.6
Sample D Male 73.6
Periaqueductal gray
nTPM: 50.0
Samples: 3

Max nTPM: 74.0
Min nTPM: 35.8
Sample B Female 40.3
Sample C Male 74.0
Sample D Male 35.8
Substantia nigra
nTPM: 76.6
Samples: 4

Max nTPM: 125.9
Min nTPM: 15.8
Sample A Female 125.9
Sample B Female 49.7
Sample C Male 115.1
Sample D Male 15.8
Superior colliculi
nTPM: 71.6
Samples: 4

Max nTPM: 109.9
Min nTPM: 41.7
Sample A Female 69.6
Sample B Female 41.7
Sample C Male 109.9
Sample D Male 65.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 315.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 315.9
Samples: 4

Max nTPM: 337.1
Min nTPM: 291.5
Sample A Male 337.1
Sample B Male 302.2
Sample C Female 291.5
Sample D Female 332.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
146 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 14.6
145 Antisense, RP_040315_01_11, Mouse strain C57BL/6J (56 days, male) 13.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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