MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.1 nTPM
HPA:59.1 nTPM
GTEx:75.7 nTPM
FANTOM5:157.3 Scaled Tags Per Million
Pig:39.9 nTPM
Mouse:46.3 nTPM
Allen mouse:6.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.2
2666 Male, age 74, left hemisphere 60.8
1870 Female, age 42, unknown 59.3
1827 Male, age 72, unknown 55.9
1833 Male, age 53, unknown 55.3
2828 Female, age 72, unknown 55.3
1830 Male, age 51, unknown 54.8
2411 Female, age 72, unknown 54.1
2219 Male, age 76, both hemispheres 53.4
2019 Male, age 18, unknown 52.7
2586 Male, age 75, left hemisphere 50.3
Dorsal raphe nucleus
nTPM: 51.3
2750 Male, age 76, both hemispheres 55.5
2016 Female, age 72, unknown 54.4
1828 Male, age 53, unknown 53.0
2047 Male, age 72, unknown 47.3
2298 Female, age 72, unknown 46.4
Inferior colliculus
nTPM: 53.3
2849 Male, age 72, unknown 57.5
1890 Male, age 53, unknown 54.3
1848 Female, age 42, unknown 51.5
2097 Female, age 72, unknown 50.0
Median raphe nucleus
nTPM: 55.8
2220 Male, age 76, midline 55.8
Pedunculopontine tegmental nucleus
nTPM: 55.8
2338 Male, age 61, both hemispheres 60.6
2334 Male, age 80, both hemispheres 55.6
1921 Female, age 85, both hemispheres 51.1
Periaquaductal grey, anterior
nTPM: 49.8
2502 Female, age 75, unknown 50.8
1947 Male, age 18, unknown 50.6
1795 Male, age 51, unknown 48.0
Periaquaductal grey, dorsal
nTPM: 57.0
2850 Male, age 76, both hemispheres 68.5
1831 Male, age 72, unknown 55.1
1840 Male, age 53, unknown 52.9
2464 Female, age 72, unknown 51.6
Periaquaductal grey, lateral
nTPM: 53.4
2140 Male, age 76, both hemispheres 57.4
2053 Male, age 18, unknown 53.9
2272 Male, age 74, both hemispheres 49.0
Pretectal area
nTPM: 52.8
2825 Male, age 18, unknown 56.9
1815 Male, age 53, unknown 56.6
1817 Female, age 42, unknown 54.8
2007 Male, age 72, unknown 53.4
1816 Male, age 51, unknown 52.9
1944 Female, age 72, unknown 52.4
2407 Male, age 75, both hemispheres 52.1
2316 Male, age 76, right hemisphere 51.3
2224 Female, age 72, unknown 51.2
2667 Female, age 75, unknown 51.0
2273 Male, age 74, both hemispheres 48.1
Red nucleus
nTPM: 59.1
2503 Female, age 72, unknown 64.6
2588 Male, age 74, left hemisphere 63.4
2823 Male, age 76, right hemisphere 62.7
1865 Male, age 51, unknown 62.2
1954 Female, age 42, unknown 60.2
2725 Female, age 75, unknown 60.2
1904 Male, age 53, unknown 60.1
1821 Female, age 72, unknown 59.0
2769 Male, age 72, unknown 57.9
2227 Male, age 72, unknown 55.5
2785 Male, age 18, unknown 54.7
2584 Male, age 75, left hemisphere 48.5
Substantia nigra
nTPM: 53.7
2665 Male, age 74, both hemispheres 58.8
2699 Male, age 18, unknown 57.9
2409 Female, age 72, unknown 53.9
1851 Male, age 51, unknown 53.7
1941 Male, age 53, unknown 53.3
2241 Male, age 72, unknown 53.0
1916 Female, age 42, unknown 52.9
2590 Female, age 75, unknown 52.0
2583 Male, age 75, right hemisphere 51.2
1889 Female, age 72, unknown 50.1
Superior colliculus
nTPM: 53.7
1913 Female, age 42, unknown 58.8
1995 Male, age 72, unknown 58.3
2587 Male, age 74, left hemisphere 57.2
2668 Female, age 75, unknown 54.8
2087 Female, age 72, unknown 53.2
1895 Male, age 76, right hemisphere 52.6
1839 Male, age 51, unknown 52.5
1796 Male, age 53, unknown 52.4
2261 Male, age 18, unknown 50.2
2664 Male, age 75, both hemispheres 47.2
Ventral tegmental area
nTPM: 52.1
2218 Male, age 76, both hemispheres 53.3
2223 Female, age 72, unknown 52.7
1915 Female, age 42, unknown 52.6
2410 Female, age 72, unknown 52.4
1942 Male, age 51, unknown 52.3
2021 Male, age 53, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.7
Samples: 139

Max nTPM: 139.2
Min nTPM: 28.9
Std nTPM: 16.6
Median nTPM: 74.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 139.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 121.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 117.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 113.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 113.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 111.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 109.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 101.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 101.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 101.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 101.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 157.3
FF:10158-103A5 76 years, female 157.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.9
Pig sample Sample description nTPM
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 54.4
Min nTPM: 31.3
Sample A Female 54.4
Sample B Female 40.9
Sample C Male 31.3
Sample D Male 33.1
Periaqueductal gray
nTPM: 39.1
Samples: 3

Max nTPM: 41.9
Min nTPM: 35.6
Sample B Female 39.9
Sample C Male 41.9
Sample D Male 35.6
Substantia nigra
nTPM: 37.5
Samples: 4

Max nTPM: 38.8
Min nTPM: 36.3
Sample A Female 38.2
Sample B Female 36.8
Sample C Male 36.3
Sample D Male 38.8
Superior colliculi
nTPM: 38.3
Samples: 4

Max nTPM: 40.3
Min nTPM: 35.6
Sample A Female 39.3
Sample B Female 40.3
Sample C Male 35.6
Sample D Male 37.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.3
Samples: 4

Max nTPM: 48.5
Min nTPM: 44.1
Sample A Male 45.0
Sample B Male 44.1
Sample C Female 48.5
Sample D Female 47.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.6
69735072 Antisense, RP_050503_02_A06, Mouse strain C57BL/6J (56 days, male) 6.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.