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SNRPD3
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:25.5 nTPM
HPA:25.5 nTPM
FANTOM5:111.9 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 25.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 23.0
2301 Female, age 85, both hemispheres 24.6
2090 Male, age 80, both hemispheres 23.6
2188 Female, age 91, both hemispheres 22.5
1984 Male, age 76, both hemispheres 21.3
Dorsal cochlear nucleus
nTPM: 21.3
2187 Female, age 91, both hemispheres 22.5
2802 Male, age 74, right hemisphere 22.3
2058 Male, age 76, both hemispheres 20.8
2370 Male, age 61, both hemispheres 20.4
2378 Male, age 80, both hemispheres 20.3
Dorsal tegmental nucleus
nTPM: 22.4
2083 Male, age 80, both hemispheres 23.3
2358 Male, age 61, both hemispheres 23.3
2326 Male, age 74, both hemispheres 23.0
1936 Male, age 76, left hemisphere 20.0
Dorsolateral tegmental area
nTPM: 22.2
2141 Male, age 76, both hemispheres 24.0
2751 Female, age 85, both hemispheres 24.0
2654 Male, age 80, both hemispheres 22.7
2360 Male, age 74, both hemispheres 20.5
2337 Male, age 61, both hemispheres 19.7
Kolliker-Fuse nucleus
nTPM: 22.5
2793 Female, age 91, left hemisphere 24.5
2163 Male, age 80, both hemispheres 22.5
2315 Male, age 76, right hemisphere 20.6
Lateral lemniscal nuclei
nTPM: 22.2
2169 Male, age 76, both hemispheres 25.8
2320 Female, age 91, left hemisphere 22.0
2746 Female, age 85, left hemisphere 21.8
2453 Male, age 74, right hemisphere 21.5
2036 Male, age 80, both hemispheres 20.0
Lateral parabrachial nucleus
nTPM: 21.9
2792 Male, age 76, both hemispheres 23.8
2139 Female, age 85, right hemisphere 22.3
2013 Male, age 80, both hemispheres 22.0
2790 Male, age 61, both hemispheres 19.5
Lateral vestibular nucleus
nTPM: 22.1
2184 Male, age 76, both hemispheres 22.2
2311 Male, age 80, both hemispheres 22.1
Locus coeruleus
nTPM: 25.0
2788 Male, age 74, unknown 26.9
2014 Male, age 55, unknown 26.5
2123 Female, age 91, both hemispheres 25.7
2720 Male, age 74, both hemispheres 25.2
1980 Male, age 76, both hemispheres 24.8
2317 Female, age 72, unknown 23.0
2162 Male, age 80, both hemispheres 22.9
Medial olivary nucleus
nTPM: 22.9
1962 Male, age 76, both hemispheres 25.4
1943 Male, age 61, both hemispheres 23.0
2138 Female, age 91, both hemispheres 22.9
2851 Male, age 80, both hemispheres 20.4
Medial parabrachial nucleus
nTPM: 23.0
2170 Female, age 91, both hemispheres 25.4
2786 Male, age 76, both hemispheres 24.4
2854 Male, age 80, both hemispheres 23.0
2463 Female, age 85, right hemisphere 21.4
2156 Male, age 61, both hemispheres 20.6
Medial periolivary nuclei
nTPM: 22.6
2791 Male, age 74, right hemisphere 23.0
2171 Female, age 85, both hemispheres 22.9
2458 Female, age 91, both hemispheres 22.9
2063 Male, age 76, both hemispheres 22.1
2081 Male, age 80, both hemispheres 21.9
Motor facial nucleus
nTPM: 22.2
2365 Male, age 74, right hemisphere 24.3
2697 Female, age 85, both hemispheres 24.2
2126 Male, age 61, both hemispheres 23.4
2062 Male, age 76, both hemispheres 21.5
2327 Male, age 80, both hemispheres 20.2
2795 Female, age 91, both hemispheres 19.8
Motor trigeminal nucleus
nTPM: 21.9
2560 Male, age 74, both hemispheres 24.3
2309 Male, age 76, both hemispheres 22.5
2321 Female, age 91, both hemispheres 21.6
2079 Male, age 80, both hemispheres 21.5
2335 Male, age 61, both hemispheres 19.4
Nuclei of the trapezoid body
nTPM: 21.4
2159 Male, age 61, both hemispheres 23.2
2166 Male, age 80, both hemispheres 21.4
1983 Male, age 76, both hemispheres 21.3
2735 Female, age 85, both hemispheres 20.9
2368 Female, age 91, both hemispheres 20.2
Paramedian reticular nucleus
nTPM: 24.0
2052 Male, age 76, both hemispheres 27.0
2050 Female, age 85, both hemispheres 23.3
2313 Male, age 61, both hemispheres 23.0
2057 Male, age 80, both hemispheres 22.9
Pontine nuclei
nTPM: 23.8
2454 Male, age 74, left hemisphere 29.1
2787 Female, age 85, both hemispheres 25.0
2727 Male, age 61, right hemisphere 24.4
2319 Female, age 91, both hemispheres 23.7
2109 Female, age 72, unknown 23.1
1968 Male, age 76, left hemisphere 22.7
1863 Male, age 55, unknown 21.9
2115 Male, age 80, left hemisphere 20.7
Pontine raphe nucleus
nTPM: 24.3
2122 Female, age 85, midline 25.1
2853 Male, age 76, midline 23.6
Posteroventral cochlear nucleus
nTPM: 23.6
2752 Female, age 85, both hemispheres 25.5
2135 Female, age 91, both hemispheres 25.2
2070 Male, age 76, both hemispheres 23.3
2341 Male, age 80, both hemispheres 23.2
2371 Male, age 61, both hemispheres 20.6
Principal sensory trigeminal nucleus
nTPM: 23.4
2367 Female, age 91, left hemisphere 25.4
2158 Male, age 61, both hemispheres 23.1
2324 Male, age 76, both hemispheres 22.7
2008 Male, age 80, left hemisphere 22.3
Reticular pontine nucleus, caudal
nTPM: 22.8
2559 Male, age 74, both hemispheres 25.6
2457 Female, age 91, both hemispheres 22.8
2092 Male, age 76, both hemispheres 22.2
2332 Male, age 80, right hemisphere 20.6
Reticular pontine nucleus, oral
nTPM: 25.5
2167 Male, age 76, both hemispheres 26.9
2361 Male, age 74, both hemispheres 26.1
1939 Male, age 80, both hemispheres 26.0
2012 Female, age 85, both hemispheres 24.2
2366 Female, age 91, both hemispheres 24.2
Reticulotegmental nucleus
nTPM: 22.4
2452 Male, age 74, both hemispheres 23.1
2325 Male, age 76, both hemispheres 22.7
2322 Female, age 91, both hemispheres 22.3
2333 Male, age 80, both hemispheres 21.7
Spinal trigeminal nucleus, oral
nTPM: 22.6
2164 Male, age 80, both hemispheres 23.5
1978 Male, age 76, both hemispheres 22.4
2737 Female, age 85, both hemispheres 21.9
Subcoeruleus area
nTPM: 23.9
2369 Female, age 85, left hemisphere 25.1
2323 Female, age 91, left hemisphere 24.9
2089 Male, age 76, left hemisphere 23.9
1958 Male, age 80, both hemispheres 23.0
2451 Male, age 74, both hemispheres 22.8
Superior olive
nTPM: 23.0
2364 Male, age 74, right hemisphere 24.3
1875 Female, age 85, both hemispheres 24.1
2020 Male, age 76, both hemispheres 22.9
2329 Male, age 80, right hemisphere 21.9
2561 Female, age 91, both hemispheres 21.6
Superior vestibular nucleus
nTPM: 22.0
2383 Male, age 74, both hemispheres 22.2
2015 Male, age 80, both hemispheres 21.9
2061 Male, age 76, both hemispheres 21.9
Ventral periolivary nuclei
nTPM: 22.3
2023 Male, age 76, both hemispheres 24.3
2130 Female, age 85, both hemispheres 23.6
2794 Female, age 91, left hemisphere 20.8
2165 Male, age 80, both hemispheres 20.4
Ventrolateral tegmental area, A5 NE cell group
nTPM: 21.9
2840 Female, age 85, both hemispheres 24.1
2456 Female, age 91, both hemispheres 21.8
2161 Male, age 80, both hemispheres 21.6
1959 Male, age 76, both hemispheres 21.4
2449 Male, age 74, both hemispheres 21.3
2359 Male, age 61, both hemispheres 21.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 111.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 105.3
FF:10165-103B3 76 years, female 108.4
FF:10182-103D2 60 years, female 102.2
Pons
Scaled Tags Per Million: 111.9
FF:10033-101E6 18-54 years, mixed 111.9

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