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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:5.8 nTPM
HPA:5.8 nTPM
GTEx:55.8 nTPM
FANTOM5:83.1 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 5.8
Sample id Sample description nTPM
Amygdala
nTPM: 4.8
1987 Female, age 91, left hemisphere 7.8
2514 Male, age 75, right hemisphere 5.2
2695 Female, age 67, right hemisphere 3.9
2814 Male, age 76, right hemisphere 3.7
2517 Female, age 94, left hemisphere 3.3
Basal amygdala
nTPM: 5.8
2609 Male, age 75, right hemisphere 10.3
2243 Female, age 91, right hemisphere 7.9
2685 Female, age 94, left hemisphere 5.1
2827 Female, age 67, right hemisphere 4.2
1955 Male, age 76, both hemispheres 3.6
2110 Male, age 80, left hemisphere 3.6
Central amygdala
nTPM: 5.3
2515 Male, age 75, right hemisphere 8.7
1905 Male, age 76, both hemispheres 5.0
2701 Female, age 91, right hemisphere 4.9
2826 Female, age 94, left hemisphere 4.1
2239 Male, age 80, left hemisphere 3.8
Corticomedial amygdala
nTPM: 5.3
2242 Female, age 91, right hemisphere 9.1
2428 Male, age 75, right hemisphere 8.8
2429 Female, age 94, left hemisphere 5.2
2535 Female, age 67, right hemisphere 3.6
2829 Male, age 80, left hemisphere 3.1
2240 Male, age 76, both hemispheres 2.0
Lateral amygdala
nTPM: 5.6
2516 Male, age 75, right hemisphere 8.5
2255 Female, age 91, right hemisphere 7.5
2534 Female, age 94, left hemisphere 7.2
2256 Male, age 80, left hemisphere 5.5
1883 Male, age 76, both hemispheres 2.9
2830 Female, age 67, right hemisphere 2.1
Stria terminalis, bed nucleus
nTPM: 3.0
2201 Male, age 74, unknown 4.3
2486 Female, age 94, both hemispheres 2.4
1974 Female, age 91, both hemispheres 2.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 55.8
Samples: 152

Max nTPM: 175.8
Min nTPM: 0.8
Std nTPM: 30.2
Median nTPM: 51.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 175.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 150.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 150.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 131.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 119.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 116.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 111.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 105.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 97.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 97.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 94.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 93.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 93.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 91.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 91.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 88.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 88.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 86.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 85.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 83.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 83.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 81.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 81.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 81.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 80.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 74.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 71.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 70.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 70.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 69.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 68.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 67.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 66.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 66.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 63.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 63.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 63.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 63.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 62.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 61.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 61.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 61.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 58.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 58.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 58.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 57.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 57.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 57.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 56.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 56.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 56.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 56.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 55.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 54.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 54.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 53.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 53.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 53.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 52.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 52.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 51.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 49.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 49.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 49.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 48.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 48.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 48.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 48.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 48.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 47.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 47.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 46.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 46.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 45.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 45.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 44.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 44.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 43.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 43.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 42.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 42.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 40.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 40.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 39.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 39.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 38.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 38.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 35.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 35.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 34.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 34.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 34.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 34.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 33.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 33.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 32.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 32.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 31.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 30.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 30.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 29.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 29.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 28.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 27.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 27.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 25.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 25.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 24.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 24.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 24.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 23.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 20.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 20.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 20.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 20.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 19.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 19.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 18.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 15.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 14.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 10.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 9.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 8.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 7.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 0.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 83.1
FF:10151-102I7 76 years, female 83.1

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