BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.4 nTPM
HPA:3.4 nTPM
GTEx:1.7 nTPM
FANTOM5:7.4 Scaled Tags Per Million
Mouse:4.7 nTPM
Allen mouse:4.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA000757
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.5
2846 Female, age 79, unknown 2.8
1781 Male, age 74, unknown 2.7
1857 Female, age 85, left hemisphere 2.6
2289 Male, age 61, right hemisphere 2.6
1854 Male, age 80, left hemisphere 2.4
2290 Female, age 72, unknown 2.2
2481 Female, age 94, left hemisphere 2.2
2288 Male, age 75, left hemisphere 2.1
Claustrum
nTPM: 3.4
2645 Female, age 72, unknown 4.7
2292 Female, age 85, both hemispheres 4.2
2196 Female, age 79, unknown 3.6
1956 Male, age 74, unknown 3.5
2198 Male, age 80, both hemispheres 3.3
2284 Female, age 91, both hemispheres 3.3
2491 Male, age 75, both hemispheres 2.9
2568 Male, age 61, both hemispheres 2.9
2392 Female, age 94, both hemispheres 2.6
Globus pallidus, externus
nTPM: 3.2
2395 Male, age 75, both hemispheres 4.1
2567 Female, age 72, unknown 3.3
2772 Female, age 79, unknown 3.3
1996 Male, age 80, right hemisphere 3.0
2646 Male, age 61, right hemisphere 2.4
Globus pallidus, internus
nTPM: 2.9
2566 Female, age 72, unknown 3.6
2037 Male, age 80, right hemisphere 3.2
2111 Female, age 85, right hemisphere 3.1
2778 Female, age 91, both hemispheres 3.1
1818 Male, age 74, unknown 2.8
2483 Female, age 94, right hemisphere 2.3
2287 Male, age 75, right hemisphere 2.1
Nucleus accumbens
nTPM: 2.3
2732 Male, age 80, right hemisphere 3.0
2698 Female, age 72, unknown 2.7
2391 Female, age 94, left hemisphere 2.5
1806 Female, age 85, left hemisphere 2.4
1783 Male, age 74, unknown 2.3
1856 Female, age 91, right hemisphere 2.1
2286 Male, age 75, left hemisphere 2.1
2824 Male, age 61, right hemisphere 1.6
Nucleus basalis of Meynert
nTPM: 3.0
2821 Male, age 75, both hemispheres 3.9
2569 Male, age 61, both hemispheres 3.1
2393 Male, age 80, right hemisphere 2.6
2484 Female, age 94, left hemisphere 2.6
Nucleus of the diagonal band
nTPM: 2.9
2029 Male, age 61, right hemisphere 3.3
1812 Female, age 91, both hemispheres 3.1
2195 Female, age 85, both hemispheres 2.9
2775 Male, age 80, right hemisphere 2.7
1979 Male, age 74, unknown 2.5
Olfactory tubercle
nTPM: 2.7
2856 Male, age 75, right hemisphere 2.9
1846 Male, age 80, right hemisphere 2.8
1998 Female, age 91, both hemispheres 2.8
2487 Female, age 94, left hemisphere 2.3
Putamen
nTPM: 2.4
2482 Female, age 94, left hemisphere 2.8
2647 Male, age 75, left hemisphere 2.7
1829 Male, age 74, unknown 2.6
2489 Female, age 72, unknown 2.4
1937 Female, age 91, right hemisphere 2.3
2466 Female, age 79, unknown 2.1
1838 Male, age 80, right hemisphere 1.9
Septal nuclei
nTPM: 3.0
1960 Male, age 74, unknown 3.6
2031 Female, age 72, unknown 3.3
2199 Male, age 80, right hemisphere 3.2
2394 Male, age 61, left hemisphere 2.9
2009 Female, age 91, both hemispheres 2.8
2059 Female, age 85, both hemispheres 2.8
2629 Female, age 94, right hemisphere 2.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.7
Samples: 246

Max nTPM: 6.4
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 1.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 6.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 4.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 4.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 3.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 3.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 3.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.6
Samples: 246

Max nTPM: 5.5
Min nTPM: 0.4
Std nTPM: 0.8
Median nTPM: 1.5
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 5.5
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 5.1
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 4.5
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 4.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 3.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 3.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 3.7
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 3.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 3.7
GTEX-14PN4-0011-R6b-SM-69LQU 50-59 years, male 3.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 3.4
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Brain - Putamen (basal ganglia)
Average nTPM: 1.7
Samples: 205

Max nTPM: 6.7
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 1.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 6.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 5.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 4.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.0
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 3.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 3.6
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 3.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 3.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 3.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 3.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 3.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 6.3
FF:10164-103B2 76 years, female 6.3
Globus pallidus
Scaled Tags Per Million: 7.4
FF:10161-103A8 76 years, female 12.4
FF:10175-103C4 60 years, female 2.3
Nucleus accumbens
Scaled Tags Per Million: 5.3
FF:10037-101F1 23-56 years, mixed 5.3
Putamen
Scaled Tags Per Million: 3.7
FF:10176-103C5 60 years, female 3.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.0
Samples: 4

Max nTPM: 5.0
Min nTPM: 3.0
Sample A Male 4.1
Sample B Male 5.0
Sample C Female 3.0
Sample D Female 3.8
Septum
nTPM: 4.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.8
Sample A Male 3.8
Sample B Male 4.1
Sample C Female 4.3
Sample D Female 3.8
Ventral forebrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.6
Sample A Male 5.4
Sample B Male 3.6
Sample C Female 5.2
Sample D Female 4.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.8
71611753 Antisense, RP_050927_02_B11, Mouse strain C57BL/6J (56 days, male) 4.8
Pallidum
Expression energy: 4.9
71611753 Antisense, RP_050927_02_B11, Mouse strain C57BL/6J (56 days, male) 4.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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