We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
LGALS1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • LGALS1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:482.4 nTPM
HPA:482.4 nTPM
GTEx:383.4 nTPM
FANTOM5:123.7 Scaled Tags Per Million
Pig:101.9 nTPM
Mouse:39.8 nTPM
Allen mouse:0.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 482.4
Sample id Sample description nTPM
Amygdala
nTPM: 482.4
2814 Male, age 76, right hemisphere 501.2
2695 Female, age 67, right hemisphere 487.7
1987 Female, age 91, left hemisphere 484.9
2514 Male, age 75, right hemisphere 478.4
2517 Female, age 94, left hemisphere 459.5
Basal amygdala
nTPM: 451.4
1955 Male, age 76, both hemispheres 477.7
2609 Male, age 75, right hemisphere 474.7
2243 Female, age 91, right hemisphere 445.8
2110 Male, age 80, left hemisphere 442.1
2685 Female, age 94, left hemisphere 436.6
2827 Female, age 67, right hemisphere 431.3
Central amygdala
nTPM: 474.6
1905 Male, age 76, both hemispheres 503.0
2515 Male, age 75, right hemisphere 494.0
2826 Female, age 94, left hemisphere 491.3
2701 Female, age 91, right hemisphere 443.8
2239 Male, age 80, left hemisphere 440.6
Corticomedial amygdala
nTPM: 451.8
2428 Male, age 75, right hemisphere 480.9
2240 Male, age 76, both hemispheres 467.2
2242 Female, age 91, right hemisphere 452.8
2429 Female, age 94, left hemisphere 446.4
2829 Male, age 80, left hemisphere 437.6
2535 Female, age 67, right hemisphere 425.7
Lateral amygdala
nTPM: 473.3
1883 Male, age 76, both hemispheres 529.7
2516 Male, age 75, right hemisphere 485.9
2534 Female, age 94, left hemisphere 477.1
2256 Male, age 80, left hemisphere 457.0
2255 Female, age 91, right hemisphere 446.4
2830 Female, age 67, right hemisphere 443.8
Stria terminalis, bed nucleus
nTPM: 449.4
1974 Female, age 91, both hemispheres 470.8
2201 Male, age 74, unknown 438.9
2486 Female, age 94, both hemispheres 438.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 383.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 383.4
Samples: 152

Max nTPM: 1100.5
Min nTPM: 132.8
Std nTPM: 158.7
Median nTPM: 352.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1100.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 932.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 840.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 822.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 790.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 770.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 751.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 709.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 687.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 681.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 659.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 629.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 620.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 595.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 589.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 587.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 577.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 545.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 537.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 521.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 517.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 516.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 514.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 498.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 491.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 486.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 486.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 485.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 484.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 478.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 470.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 466.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 465.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 464.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 463.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 462.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 455.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 451.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 446.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 444.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 443.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 441.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 436.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 423.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 423.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 422.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 420.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 420.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 416.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 416.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 416.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 414.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 403.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 402.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 397.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 393.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 390.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 385.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 384.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 383.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 382.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 381.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 379.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 379.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 378.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 376.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 376.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 374.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 373.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 367.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 364.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 362.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 361.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 355.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 354.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 352.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 352.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 351.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 350.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 350.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 348.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 347.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 346.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 346.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 345.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 344.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 342.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 339.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 339.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 337.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 330.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 330.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 329.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 328.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 327.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 326.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 325.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 325.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 322.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 317.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 317.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 316.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 313.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 307.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 306.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 305.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 303.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 301.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 297.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 289.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 289.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 281.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 278.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 271.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 271.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 271.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 269.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 265.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 260.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 254.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 251.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 251.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 249.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 245.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 240.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 239.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 239.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 232.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 227.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 226.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 224.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 223.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 221.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 213.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 212.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 211.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 208.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 208.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 197.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 196.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 179.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 176.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 176.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 169.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 160.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 158.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 147.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 132.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 123.7
FF:10151-102I7 76 years, female 123.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.9
Pig sample Sample description nTPM
Amygdala
nTPM: 102.0
Samples: 4

Max nTPM: 113.7
Min nTPM: 85.2
Sample A Female 85.2
Sample B Female 113.1
Sample C Male 113.7
Sample D Male 95.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 39.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 39.8
Samples: 4

Max nTPM: 41.8
Min nTPM: 38.7
Sample A Male 38.7
Sample B Male 39.8
Sample C Female 38.8
Sample D Female 41.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.7
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.7
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.