MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:576.1 nTPM
HPA:576.1 nTPM
GTEx:670.1 nTPM
FANTOM5:279.1 Scaled Tags Per Million
Pig:631.2 nTPM
Mouse:27.9 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 576.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 498.4
2019 Male, age 18, unknown 560.6
2828 Female, age 72, unknown 523.1
2411 Female, age 72, unknown 522.0
1827 Male, age 72, unknown 510.0
1870 Female, age 42, unknown 501.3
1830 Male, age 51, unknown 489.8
2666 Male, age 74, left hemisphere 489.2
2219 Male, age 76, both hemispheres 468.9
1833 Male, age 53, unknown 466.1
2586 Male, age 75, left hemisphere 453.3
Dorsal raphe nucleus
nTPM: 529.3
2750 Male, age 76, both hemispheres 588.1
1828 Male, age 53, unknown 544.6
2298 Female, age 72, unknown 524.5
2047 Male, age 72, unknown 524.3
2016 Female, age 72, unknown 464.9
Inferior colliculus
nTPM: 441.0
1848 Female, age 42, unknown 454.8
2097 Female, age 72, unknown 449.6
1890 Male, age 53, unknown 438.9
2849 Male, age 72, unknown 420.5
Median raphe nucleus
nTPM: 554.2
2220 Male, age 76, midline 554.2
Pedunculopontine tegmental nucleus
nTPM: 576.1
2338 Male, age 61, both hemispheres 634.7
2334 Male, age 80, both hemispheres 585.0
1921 Female, age 85, both hemispheres 508.5
Periaquaductal grey, anterior
nTPM: 540.1
1795 Male, age 51, unknown 574.1
1947 Male, age 18, unknown 551.6
2502 Female, age 75, unknown 494.6
Periaquaductal grey, dorsal
nTPM: 448.5
1831 Male, age 72, unknown 460.1
2850 Male, age 76, both hemispheres 457.9
2464 Female, age 72, unknown 451.4
1840 Male, age 53, unknown 424.7
Periaquaductal grey, lateral
nTPM: 477.0
2272 Male, age 74, both hemispheres 505.0
2053 Male, age 18, unknown 465.7
2140 Male, age 76, both hemispheres 460.2
Pretectal area
nTPM: 517.0
2007 Male, age 72, unknown 607.7
1817 Female, age 42, unknown 563.7
1816 Male, age 51, unknown 544.8
1944 Female, age 72, unknown 536.1
2273 Male, age 74, both hemispheres 534.2
1815 Male, age 53, unknown 513.9
2224 Female, age 72, unknown 495.5
2667 Female, age 75, unknown 493.1
2825 Male, age 18, unknown 474.6
2407 Male, age 75, both hemispheres 465.6
2316 Male, age 76, right hemisphere 458.1
Red nucleus
nTPM: 518.4
2785 Male, age 18, unknown 549.0
2823 Male, age 76, right hemisphere 534.8
1821 Female, age 72, unknown 531.1
1865 Male, age 51, unknown 528.3
2503 Female, age 72, unknown 520.0
2725 Female, age 75, unknown 519.0
2769 Male, age 72, unknown 516.1
1954 Female, age 42, unknown 515.1
2227 Male, age 72, unknown 511.4
2588 Male, age 74, left hemisphere 507.0
1904 Male, age 53, unknown 501.3
2584 Male, age 75, left hemisphere 487.1
Substantia nigra
nTPM: 502.8
1941 Male, age 53, unknown 597.5
1889 Female, age 72, unknown 541.1
1851 Male, age 51, unknown 529.8
2590 Female, age 75, unknown 513.1
1916 Female, age 42, unknown 509.3
2583 Male, age 75, right hemisphere 475.2
2409 Female, age 72, unknown 473.5
2665 Male, age 74, both hemispheres 472.1
2241 Male, age 72, unknown 468.0
2699 Male, age 18, unknown 448.1
Superior colliculus
nTPM: 490.1
2668 Female, age 75, unknown 525.6
2587 Male, age 74, left hemisphere 521.2
2261 Male, age 18, unknown 510.5
2087 Female, age 72, unknown 505.6
1796 Male, age 53, unknown 499.5
1913 Female, age 42, unknown 491.4
1995 Male, age 72, unknown 470.6
2664 Male, age 75, both hemispheres 465.4
1895 Male, age 76, right hemisphere 456.1
1839 Male, age 51, unknown 454.6
Ventral tegmental area
nTPM: 516.9
2223 Female, age 72, unknown 573.7
2410 Female, age 72, unknown 532.9
2218 Male, age 76, both hemispheres 525.9
2021 Male, age 53, unknown 501.5
1915 Female, age 42, unknown 496.3
1942 Male, age 51, unknown 470.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 670.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 670.1
Samples: 139

Max nTPM: 1424.2
Min nTPM: 198.5
Std nTPM: 223.7
Median nTPM: 642.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1424.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1365.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1337.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1240.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1221.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1192.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1184.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1135.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1116.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1102.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1093.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 279.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 279.1
FF:10158-103A5 76 years, female 279.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 631.2
Pig sample Sample description nTPM
Midbrain
nTPM: 414.4
Samples: 4

Max nTPM: 897.7
Min nTPM: 134.4
Sample A Female 897.7
Sample B Female 374.7
Sample C Male 250.8
Sample D Male 134.4
Periaqueductal gray
nTPM: 273.9
Samples: 3

Max nTPM: 321.8
Min nTPM: 207.1
Sample B Female 207.1
Sample C Male 321.8
Sample D Male 292.8
Substantia nigra
nTPM: 631.2
Samples: 4

Max nTPM: 958.8
Min nTPM: 243.8
Sample A Female 958.8
Sample B Female 739.5
Sample C Male 582.8
Sample D Male 243.8
Superior colliculi
nTPM: 320.1
Samples: 4

Max nTPM: 453.2
Min nTPM: 245.6
Sample A Female 263.2
Sample B Female 453.2
Sample C Male 318.3
Sample D Male 245.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 32.4
Min nTPM: 24.0
Sample A Male 32.4
Sample B Male 26.6
Sample C Female 24.0
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70634417 Antisense, RP_050725_01_F12, Mouse strain C57BL/6J (56 days, male) 0.4
75651181 Antisense, RP_060518_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3
79749622 Antisense, RP_071204_02_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.