MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:73.4 nTPM
HPA:73.4 nTPM
GTEx:72.4 nTPM
FANTOM5:20.0 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:139.8 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2219 Male, age 76, both hemispheres 77.8
2666 Male, age 74, left hemisphere 69.9
2828 Female, age 72, unknown 66.9
1827 Male, age 72, unknown 65.8
2019 Male, age 18, unknown 60.0
2411 Female, age 72, unknown 52.6
1833 Male, age 53, unknown 50.3
1870 Female, age 42, unknown 47.2
1830 Male, age 51, unknown 45.1
2586 Male, age 75, left hemisphere 43.0
Dorsal raphe nucleus
nTPM: 52.2
2298 Female, age 72, unknown 60.3
2750 Male, age 76, both hemispheres 56.2
1828 Male, age 53, unknown 49.7
2047 Male, age 72, unknown 49.1
2016 Female, age 72, unknown 45.6
Inferior colliculus
nTPM: 54.2
2097 Female, age 72, unknown 59.5
2849 Male, age 72, unknown 56.0
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 49.2
Median raphe nucleus
nTPM: 73.4
2220 Male, age 76, midline 73.4
Pedunculopontine tegmental nucleus
nTPM: 58.5
1921 Female, age 85, both hemispheres 70.1
2334 Male, age 80, both hemispheres 60.6
2338 Male, age 61, both hemispheres 44.7
Periaquaductal grey, anterior
nTPM: 65.8
1795 Male, age 51, unknown 71.2
2502 Female, age 75, unknown 67.0
1947 Male, age 18, unknown 59.4
Periaquaductal grey, dorsal
nTPM: 54.7
1840 Male, age 53, unknown 57.7
2850 Male, age 76, both hemispheres 56.3
1831 Male, age 72, unknown 56.0
2464 Female, age 72, unknown 48.8
Periaquaductal grey, lateral
nTPM: 50.1
2140 Male, age 76, both hemispheres 54.0
2053 Male, age 18, unknown 51.5
2272 Male, age 74, both hemispheres 44.9
Pretectal area
nTPM: 68.5
1816 Male, age 51, unknown 88.7
1817 Female, age 42, unknown 84.1
1944 Female, age 72, unknown 82.7
1815 Male, age 53, unknown 77.2
2667 Female, age 75, unknown 77.1
2007 Male, age 72, unknown 76.6
2224 Female, age 72, unknown 64.9
2825 Male, age 18, unknown 55.5
2273 Male, age 74, both hemispheres 49.5
2407 Male, age 75, both hemispheres 48.7
2316 Male, age 76, right hemisphere 48.5
Red nucleus
nTPM: 48.7
2785 Male, age 18, unknown 57.1
1821 Female, age 72, unknown 55.4
1954 Female, age 42, unknown 51.7
2725 Female, age 75, unknown 51.5
2503 Female, age 72, unknown 49.2
2584 Male, age 75, left hemisphere 48.7
2769 Male, age 72, unknown 47.1
2227 Male, age 72, unknown 47.0
2823 Male, age 76, right hemisphere 46.5
2588 Male, age 74, left hemisphere 45.2
1904 Male, age 53, unknown 44.1
1865 Male, age 51, unknown 40.8
Substantia nigra
nTPM: 68.1
1916 Female, age 42, unknown 95.6
2665 Male, age 74, both hemispheres 79.8
1889 Female, age 72, unknown 74.0
1941 Male, age 53, unknown 73.3
2241 Male, age 72, unknown 73.1
1851 Male, age 51, unknown 72.6
2409 Female, age 72, unknown 65.4
2699 Male, age 18, unknown 63.8
2590 Female, age 75, unknown 44.0
2583 Male, age 75, right hemisphere 39.3
Superior colliculus
nTPM: 57.5
1796 Male, age 53, unknown 72.3
2087 Female, age 72, unknown 70.3
2668 Female, age 75, unknown 68.0
1895 Male, age 76, right hemisphere 59.8
2261 Male, age 18, unknown 59.2
1839 Male, age 51, unknown 56.2
2664 Male, age 75, both hemispheres 52.1
2587 Male, age 74, left hemisphere 50.9
1913 Female, age 42, unknown 45.5
1995 Male, age 72, unknown 41.0
Ventral tegmental area
nTPM: 65.7
2218 Male, age 76, both hemispheres 80.1
1915 Female, age 42, unknown 70.1
2410 Female, age 72, unknown 69.6
1942 Male, age 51, unknown 63.0
2223 Female, age 72, unknown 58.1
2021 Male, age 53, unknown 53.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 211.5
Min nTPM: 10.1
Std nTPM: 42.1
Median nTPM: 65.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 211.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 189.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 178.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 177.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 168.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 167.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 157.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 157.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 157.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 154.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 151.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.0
FF:10158-103A5 76 years, female 20.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.4
Pig sample Sample description nTPM
Midbrain
nTPM: 72.4
Samples: 4

Max nTPM: 98.6
Min nTPM: 50.3
Sample A Female 50.3
Sample B Female 60.7
Sample C Male 80.1
Sample D Male 98.6
Periaqueductal gray
nTPM: 63.9
Samples: 3

Max nTPM: 75.5
Min nTPM: 55.7
Sample B Female 60.4
Sample C Male 75.5
Sample D Male 55.7
Substantia nigra
nTPM: 66.4
Samples: 4

Max nTPM: 98.3
Min nTPM: 33.8
Sample A Female 84.1
Sample B Female 49.2
Sample C Male 98.3
Sample D Male 33.8
Superior colliculi
nTPM: 66.5
Samples: 4

Max nTPM: 86.3
Min nTPM: 28.6
Sample A Female 84.2
Sample B Female 28.6
Sample C Male 66.9
Sample D Male 86.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 139.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.8
Samples: 4

Max nTPM: 142.6
Min nTPM: 137.5
Sample A Male 138.0
Sample B Male 142.6
Sample C Female 141.2
Sample D Female 137.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
69838258 Antisense, RP_050301_01_B07, Mouse strain C57BL/6J (56 days, male) 8.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.