MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:149.4 nTPM
HPA:149.4 nTPM
GTEx:137.4 nTPM
FANTOM5:622.8 Scaled Tags Per Million
Pig:185.5 nTPM
Mouse:125.1 nTPM
Allen mouse:18.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 149.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 139.7
2411 Female, age 72, unknown 150.0
1830 Male, age 51, unknown 147.8
1833 Male, age 53, unknown 147.3
1870 Female, age 42, unknown 147.1
2019 Male, age 18, unknown 140.8
1827 Male, age 72, unknown 139.8
2828 Female, age 72, unknown 139.7
2666 Male, age 74, left hemisphere 133.7
2219 Male, age 76, both hemispheres 129.8
2586 Male, age 75, left hemisphere 121.1
Dorsal raphe nucleus
nTPM: 139.5
2750 Male, age 76, both hemispheres 147.5
2016 Female, age 72, unknown 143.3
1828 Male, age 53, unknown 136.8
2298 Female, age 72, unknown 135.4
2047 Male, age 72, unknown 134.6
Inferior colliculus
nTPM: 141.5
1848 Female, age 42, unknown 143.6
2849 Male, age 72, unknown 142.7
1890 Male, age 53, unknown 142.1
2097 Female, age 72, unknown 137.5
Median raphe nucleus
nTPM: 142.8
2220 Male, age 76, midline 142.8
Pedunculopontine tegmental nucleus
nTPM: 141.3
2338 Male, age 61, both hemispheres 146.1
1921 Female, age 85, both hemispheres 141.3
2334 Male, age 80, both hemispheres 136.5
Periaquaductal grey, anterior
nTPM: 133.6
1947 Male, age 18, unknown 140.2
1795 Male, age 51, unknown 132.4
2502 Female, age 75, unknown 128.2
Periaquaductal grey, dorsal
nTPM: 143.7
2850 Male, age 76, both hemispheres 148.7
2464 Female, age 72, unknown 143.5
1831 Male, age 72, unknown 142.1
1840 Male, age 53, unknown 140.2
Periaquaductal grey, lateral
nTPM: 149.4
2272 Male, age 74, both hemispheres 152.8
2140 Male, age 76, both hemispheres 150.5
2053 Male, age 18, unknown 145.0
Pretectal area
nTPM: 141.9
2273 Male, age 74, both hemispheres 157.7
2316 Male, age 76, right hemisphere 154.4
2667 Female, age 75, unknown 144.7
1815 Male, age 53, unknown 142.3
2825 Male, age 18, unknown 141.8
2224 Female, age 72, unknown 140.8
2407 Male, age 75, both hemispheres 140.6
2007 Male, age 72, unknown 136.1
1817 Female, age 42, unknown 135.4
1944 Female, age 72, unknown 134.9
1816 Male, age 51, unknown 132.4
Red nucleus
nTPM: 147.1
2823 Male, age 76, right hemisphere 155.2
1904 Male, age 53, unknown 152.6
1865 Male, age 51, unknown 151.9
2503 Female, age 72, unknown 150.7
2769 Male, age 72, unknown 148.8
1821 Female, age 72, unknown 148.3
2227 Male, age 72, unknown 147.9
1954 Female, age 42, unknown 147.7
2588 Male, age 74, left hemisphere 143.7
2785 Male, age 18, unknown 143.7
2725 Female, age 75, unknown 141.7
2584 Male, age 75, left hemisphere 133.2
Substantia nigra
nTPM: 136.3
2409 Female, age 72, unknown 150.9
2590 Female, age 75, unknown 142.4
2583 Male, age 75, right hemisphere 140.1
2699 Male, age 18, unknown 136.0
1889 Female, age 72, unknown 135.7
1851 Male, age 51, unknown 135.0
2241 Male, age 72, unknown 134.8
1941 Male, age 53, unknown 132.6
2665 Male, age 74, both hemispheres 129.8
1916 Female, age 42, unknown 125.4
Superior colliculus
nTPM: 141.5
1913 Female, age 42, unknown 156.1
1995 Male, age 72, unknown 150.1
1895 Male, age 76, right hemisphere 147.4
2668 Female, age 75, unknown 142.3
1839 Male, age 51, unknown 141.5
2587 Male, age 74, left hemisphere 140.9
2261 Male, age 18, unknown 138.7
2087 Female, age 72, unknown 138.1
1796 Male, age 53, unknown 134.8
2664 Male, age 75, both hemispheres 124.9
Ventral tegmental area
nTPM: 136.8
2410 Female, age 72, unknown 141.5
2223 Female, age 72, unknown 138.5
2021 Male, age 53, unknown 138.3
1942 Male, age 51, unknown 135.4
2218 Male, age 76, both hemispheres 134.5
1915 Female, age 42, unknown 132.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 137.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 137.4
Samples: 139

Max nTPM: 265.1
Min nTPM: 60.1
Std nTPM: 39.3
Median nTPM: 130.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 265.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 261.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 243.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 240.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 239.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 225.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 213.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 212.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 211.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 204.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 202.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 622.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 622.8
FF:10158-103A5 76 years, female 622.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 185.5
Pig sample Sample description nTPM
Midbrain
nTPM: 184.8
Samples: 4

Max nTPM: 217.7
Min nTPM: 168.0
Sample A Female 217.7
Sample B Female 184.4
Sample C Male 168.0
Sample D Male 168.9
Periaqueductal gray
nTPM: 183.9
Samples: 3

Max nTPM: 194.0
Min nTPM: 172.0
Sample B Female 185.6
Sample C Male 172.0
Sample D Male 194.0
Substantia nigra
nTPM: 185.5
Samples: 4

Max nTPM: 238.2
Min nTPM: 148.6
Sample A Female 148.6
Sample B Female 188.4
Sample C Male 166.8
Sample D Male 238.2
Superior colliculi
nTPM: 176.4
Samples: 4

Max nTPM: 189.4
Min nTPM: 162.8
Sample A Female 162.8
Sample B Female 189.4
Sample C Male 170.6
Sample D Male 182.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.1
Samples: 4

Max nTPM: 131.0
Min nTPM: 121.7
Sample A Male 123.9
Sample B Male 121.7
Sample C Female 131.0
Sample D Female 123.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.7
77620754 Antisense, RP_070129_03_F07, Mouse strain C57BL/6J (56 days, male) 18.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.