MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.8 nTPM
HPA:36.8 nTPM
GTEx:35.4 nTPM
FANTOM5:59.7 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:79.7 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.3
2666 Male, age 74, left hemisphere 34.7
2019 Male, age 18, unknown 30.7
1833 Male, age 53, unknown 29.7
1870 Female, age 42, unknown 29.3
2411 Female, age 72, unknown 29.3
1830 Male, age 51, unknown 28.7
2219 Male, age 76, both hemispheres 28.6
2586 Male, age 75, left hemisphere 26.2
1827 Male, age 72, unknown 23.5
2828 Female, age 72, unknown 22.4
Dorsal raphe nucleus
nTPM: 30.0
1828 Male, age 53, unknown 37.0
2047 Male, age 72, unknown 30.3
2750 Male, age 76, both hemispheres 27.8
2016 Female, age 72, unknown 27.6
2298 Female, age 72, unknown 27.2
Inferior colliculus
nTPM: 27.8
2849 Male, age 72, unknown 29.9
1848 Female, age 42, unknown 29.0
1890 Male, age 53, unknown 27.9
2097 Female, age 72, unknown 24.3
Median raphe nucleus
nTPM: 28.0
2220 Male, age 76, midline 28.0
Pedunculopontine tegmental nucleus
nTPM: 31.8
2338 Male, age 61, both hemispheres 36.5
1921 Female, age 85, both hemispheres 31.5
2334 Male, age 80, both hemispheres 27.2
Periaquaductal grey, anterior
nTPM: 25.9
1947 Male, age 18, unknown 30.4
2502 Female, age 75, unknown 26.6
1795 Male, age 51, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 27.0
2850 Male, age 76, both hemispheres 29.2
1840 Male, age 53, unknown 28.7
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 23.6
Periaquaductal grey, lateral
nTPM: 26.9
2140 Male, age 76, both hemispheres 31.1
2272 Male, age 74, both hemispheres 26.7
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 28.9
1816 Male, age 51, unknown 35.0
1944 Female, age 72, unknown 33.3
2007 Male, age 72, unknown 29.1
2316 Male, age 76, right hemisphere 29.0
1817 Female, age 42, unknown 28.7
2407 Male, age 75, both hemispheres 28.6
2224 Female, age 72, unknown 28.3
2667 Female, age 75, unknown 28.0
2825 Male, age 18, unknown 27.9
2273 Male, age 74, both hemispheres 25.8
1815 Male, age 53, unknown 24.2
Red nucleus
nTPM: 36.8
1821 Female, age 72, unknown 43.5
1954 Female, age 42, unknown 42.8
2769 Male, age 72, unknown 42.5
2227 Male, age 72, unknown 41.9
2823 Male, age 76, right hemisphere 40.0
1865 Male, age 51, unknown 36.6
1904 Male, age 53, unknown 36.6
2503 Female, age 72, unknown 34.2
2588 Male, age 74, left hemisphere 33.6
2725 Female, age 75, unknown 31.7
2785 Male, age 18, unknown 29.8
2584 Male, age 75, left hemisphere 28.4
Substantia nigra
nTPM: 34.0
1941 Male, age 53, unknown 38.9
1916 Female, age 42, unknown 38.8
2699 Male, age 18, unknown 37.0
2665 Male, age 74, both hemispheres 36.2
2241 Male, age 72, unknown 34.6
1851 Male, age 51, unknown 34.2
2590 Female, age 75, unknown 32.9
2583 Male, age 75, right hemisphere 29.7
1889 Female, age 72, unknown 29.3
2409 Female, age 72, unknown 28.5
Superior colliculus
nTPM: 28.1
2087 Female, age 72, unknown 35.4
2668 Female, age 75, unknown 32.2
1895 Male, age 76, right hemisphere 28.9
1839 Male, age 51, unknown 28.6
2261 Male, age 18, unknown 28.5
2587 Male, age 74, left hemisphere 28.5
2664 Male, age 75, both hemispheres 25.9
1995 Male, age 72, unknown 25.2
1913 Female, age 42, unknown 24.3
1796 Male, age 53, unknown 23.1
Ventral tegmental area
nTPM: 30.6
1915 Female, age 42, unknown 34.0
2410 Female, age 72, unknown 33.3
2218 Male, age 76, both hemispheres 32.4
1942 Male, age 51, unknown 29.3
2223 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.4
Samples: 139

Max nTPM: 83.7
Min nTPM: 21.0
Std nTPM: 9.4
Median nTPM: 34.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 62.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 56.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 54.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 53.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.7
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 51.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 51.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 49.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 49.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.7
FF:10158-103A5 76 years, female 59.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.7
Pig sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 29.7
Min nTPM: 14.7
Sample A Female 29.7
Sample B Female 15.9
Sample C Male 15.0
Sample D Male 14.7
Periaqueductal gray
nTPM: 16.1
Samples: 3

Max nTPM: 17.9
Min nTPM: 14.8
Sample B Female 15.7
Sample C Male 17.9
Sample D Male 14.8
Substantia nigra
nTPM: 17.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 16.3
Sample A Female 17.2
Sample B Female 16.3
Sample C Male 16.5
Sample D Male 20.1
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.1
Sample A Female 17.8
Sample B Female 17.1
Sample C Male 23.5
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.7
Samples: 4

Max nTPM: 87.3
Min nTPM: 72.0
Sample A Male 72.0
Sample B Male 76.9
Sample C Female 87.3
Sample D Female 82.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
74638864 Antisense, RP_051214_02_D05, Mouse strain C57BL/6J (56 days, male) 4.9
74047920 Antisense, RP_051214_02_D05, Mouse strain C57BL/6J (56 days, male) 3.0
68080689 Antisense, RP_040929_01_E07, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.