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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:58.3 nTPM
HPA:58.3 nTPM
GTEx:55.8 nTPM
FANTOM5:30.2 Scaled Tags Per Million
Pig:1241.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 58.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 37.3
2194 Female, age 79, both hemispheres 61.3
2816 Male, age 47, midline 60.0
1981 Female, age 72, midline 33.9
2048 Male, age 55, midline 31.2
2565 Male, age 75, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 27.7
2173 Female, age 72, unknown 115.8
2721 Male, age 90, both hemispheres 24.5
2297 Male, age 75, both hemispheres 19.4
1877 Male, age 55, unknown 6.4
2069 Male, age 47, both hemispheres 0.0
2296 Male, age 66, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 58.3
2820 Female, age 79, both hemispheres 129.7
2068 Male, age 55, unknown 100.2
2098 Female, age 72, unknown 45.6
2480 Male, age 75, both hemispheres 39.2
2295 Male, age 66, both hemispheres 19.6
2809 Male, age 90, both hemispheres 15.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.8
Samples: 159

Max nTPM: 927.2
Min nTPM: 2.4
Std nTPM: 132.2
Median nTPM: 14.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 927.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 848.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 733.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 628.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 467.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 303.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 253.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 211.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 198.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 198.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 191.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 130.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 130.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 113.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 109.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 104.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 97.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 92.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 91.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 85.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 81.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 80.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 77.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 73.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 73.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 73.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 69.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 60.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 59.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 57.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 51.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 45.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 45.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 43.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 40.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 39.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 38.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 38.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 37.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 37.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 37.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 35.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 32.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 32.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 32.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 30.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 30.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 29.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 29.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 29.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 28.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 26.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 26.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 24.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 24.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 23.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 23.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 23.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 23.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 20.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 20.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 20.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 19.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 19.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 18.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 18.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 18.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 17.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 17.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 15.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 15.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 14.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 14.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 14.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 14.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 14.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 12.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 12.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 12.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 12.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 12.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 12.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 11.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 11.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 11.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 11.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 11.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 11.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 11.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 11.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 11.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 10.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 10.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 10.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 10.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 10.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 10.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 10.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 10.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 9.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 9.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 9.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 9.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 9.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 9.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 9.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 9.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 9.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 8.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 8.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 8.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 7.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 7.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 7.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 7.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 7.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 7.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 7.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 7.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 6.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 6.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 6.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 6.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 6.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 6.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 6.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 6.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 6.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 6.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 5.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 5.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 5.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 5.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 5.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 5.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 5.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 5.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 5.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 4.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 4.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 4.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 30.2
FF:10181-103D1 60 years, female 54.2
FF:10159-103A6 76 years, female 6.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1241.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 200.7
Samples: 4

Max nTPM: 319.5
Min nTPM: 98.1
Sample A Female 319.5
Sample B Female 103.4
Sample C Male 98.1
Sample D Male 281.7
Ventral spinal cord
nTPM: 1241.2
Samples: 4

Max nTPM: 1529.9
Min nTPM: 589.3
Sample A Female 1529.9
Sample B Female 1439.5
Sample C Male 1406.2
Sample D Male 589.3

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