BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.9 nTPM
HPA:52.9 nTPM
GTEx:77.5 nTPM
FANTOM5:98.8 Scaled Tags Per Million
Mouse:24.2 nTPM
Allen mouse:2.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA048677Antibody HPA056480Antibody CAB011574
Glial cells Not detectedNot detectedLow
Neuronal cells Not detectedLowMedium




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 50.5
1781 Male, age 74, unknown 54.7
2290 Female, age 72, unknown 53.7
2846 Female, age 79, unknown 52.7
1857 Female, age 85, left hemisphere 51.6
2288 Male, age 75, left hemisphere 51.0
1854 Male, age 80, left hemisphere 50.3
2289 Male, age 61, right hemisphere 48.0
2481 Female, age 94, left hemisphere 41.4
Claustrum
nTPM: 49.7
2568 Male, age 61, both hemispheres 58.0
2645 Female, age 72, unknown 56.4
2284 Female, age 91, both hemispheres 55.5
2491 Male, age 75, both hemispheres 53.1
2198 Male, age 80, both hemispheres 48.3
2196 Female, age 79, unknown 48.0
1956 Male, age 74, unknown 44.8
2392 Female, age 94, both hemispheres 44.1
2292 Female, age 85, both hemispheres 39.1
Globus pallidus, externus
nTPM: 43.9
2646 Male, age 61, right hemisphere 51.1
2567 Female, age 72, unknown 50.4
2772 Female, age 79, unknown 42.6
2395 Male, age 75, both hemispheres 37.8
1996 Male, age 80, right hemisphere 37.3
Globus pallidus, internus
nTPM: 42.1
2566 Female, age 72, unknown 46.7
2483 Female, age 94, right hemisphere 45.0
1818 Male, age 74, unknown 44.0
2287 Male, age 75, right hemisphere 44.0
2778 Female, age 91, both hemispheres 39.6
2037 Male, age 80, right hemisphere 37.8
2111 Female, age 85, right hemisphere 37.6
Nucleus accumbens
nTPM: 51.9
1783 Male, age 74, unknown 62.1
1856 Female, age 91, right hemisphere 60.0
2824 Male, age 61, right hemisphere 59.0
1806 Female, age 85, left hemisphere 52.7
2286 Male, age 75, left hemisphere 49.8
2698 Female, age 72, unknown 48.4
2732 Male, age 80, right hemisphere 42.3
2391 Female, age 94, left hemisphere 40.5
Nucleus basalis of Meynert
nTPM: 48.4
2569 Male, age 61, both hemispheres 53.3
2484 Female, age 94, left hemisphere 49.3
2821 Male, age 75, both hemispheres 47.7
2393 Male, age 80, right hemisphere 43.2
Nucleus of the diagonal band
nTPM: 52.6
2029 Male, age 61, right hemisphere 58.9
2775 Male, age 80, right hemisphere 53.5
1812 Female, age 91, both hemispheres 51.8
2195 Female, age 85, both hemispheres 51.4
1979 Male, age 74, unknown 47.5
Olfactory tubercle
nTPM: 52.9
1998 Female, age 91, both hemispheres 55.2
2487 Female, age 94, left hemisphere 52.5
1846 Male, age 80, right hemisphere 52.2
2856 Male, age 75, right hemisphere 51.6
Putamen
nTPM: 52.9
2647 Male, age 75, left hemisphere 64.8
1937 Female, age 91, right hemisphere 53.5
1838 Male, age 80, right hemisphere 53.2
2489 Female, age 72, unknown 52.5
2466 Female, age 79, unknown 50.9
1829 Male, age 74, unknown 49.1
2482 Female, age 94, left hemisphere 46.3
Septal nuclei
nTPM: 47.6
1960 Male, age 74, unknown 56.7
2031 Female, age 72, unknown 52.3
2059 Female, age 85, both hemispheres 51.8
2394 Male, age 61, left hemisphere 45.3
2009 Female, age 91, both hemispheres 45.2
2629 Female, age 94, right hemisphere 44.9
2199 Male, age 80, right hemisphere 36.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 77.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 114.3
Min nTPM: 30.9
Std nTPM: 15.7
Median nTPM: 58.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 114.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 104.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 98.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 97.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 95.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 95.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 95.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 94.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 93.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 93.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 93.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.5
Samples: 246

Max nTPM: 130.7
Min nTPM: 13.9
Std nTPM: 21.5
Median nTPM: 81.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 130.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 128.2
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 125.9
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 121.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 118.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 118.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 117.1
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 113.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 112.9
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 112.5
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 112.3
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Brain - Putamen (basal ganglia)
Average nTPM: 59.9
Samples: 205

Max nTPM: 107.5
Min nTPM: 29.1
Std nTPM: 14.9
Median nTPM: 59.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 107.5
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 101.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 94.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 89.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 88.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 87.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 86.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 85.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 85.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 85.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 84.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.8
FF:10164-103B2 76 years, female 98.8
Globus pallidus
Scaled Tags Per Million: 48.5
FF:10161-103A8 76 years, female 67.9
FF:10175-103C4 60 years, female 29.2
Nucleus accumbens
Scaled Tags Per Million: 94.8
FF:10037-101F1 23-56 years, mixed 94.8
Putamen
Scaled Tags Per Million: 83.1
FF:10176-103C5 60 years, female 83.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.9
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.3
Sample A Male 27.2
Sample B Male 26.5
Sample C Female 21.4
Sample D Female 20.3
Septum
nTPM: 17.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 15.6
Sample A Male 21.4
Sample B Male 15.6
Sample C Female 16.9
Sample D Female 17.1
Ventral forebrain
nTPM: 24.2
Samples: 4

Max nTPM: 27.7
Min nTPM: 20.8
Sample A Male 27.7
Sample B Male 24.1
Sample C Female 24.1
Sample D Female 20.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
68446081 Antisense, RP_050113_01_E03, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 2.1
68446081 Antisense, RP_050113_01_E03, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

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