MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:28.9 nTPM
HPA:28.9 nTPM
GTEx:28.9 nTPM
FANTOM5:36.2 Scaled Tags Per Million
Pig:4.0 nTPM
Mouse:46.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2019 Male, age 18, unknown 24.7
1827 Male, age 72, unknown 24.2
1870 Female, age 42, unknown 24.1
2411 Female, age 72, unknown 24.0
1833 Male, age 53, unknown 23.6
2586 Male, age 75, left hemisphere 23.6
2828 Female, age 72, unknown 22.9
1830 Male, age 51, unknown 22.8
2666 Male, age 74, left hemisphere 22.0
2219 Male, age 76, both hemispheres 21.8
Dorsal raphe nucleus
nTPM: 25.4
2298 Female, age 72, unknown 30.2
1828 Male, age 53, unknown 25.5
2016 Female, age 72, unknown 24.5
2750 Male, age 76, both hemispheres 23.7
2047 Male, age 72, unknown 23.1
Inferior colliculus
nTPM: 22.5
2849 Male, age 72, unknown 23.8
1890 Male, age 53, unknown 22.9
1848 Female, age 42, unknown 22.5
2097 Female, age 72, unknown 20.7
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Pedunculopontine tegmental nucleus
nTPM: 23.0
2334 Male, age 80, both hemispheres 24.4
1921 Female, age 85, both hemispheres 22.9
2338 Male, age 61, both hemispheres 21.6
Periaquaductal grey, anterior
nTPM: 23.3
1795 Male, age 51, unknown 24.8
1947 Male, age 18, unknown 24.2
2502 Female, age 75, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 24.1
2850 Male, age 76, both hemispheres 27.9
1840 Male, age 53, unknown 23.4
2464 Female, age 72, unknown 22.7
1831 Male, age 72, unknown 22.4
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 38.9
2140 Male, age 76, both hemispheres 24.5
2053 Male, age 18, unknown 23.5
Pretectal area
nTPM: 24.7
2273 Male, age 74, both hemispheres 33.5
2224 Female, age 72, unknown 25.7
2667 Female, age 75, unknown 25.4
1816 Male, age 51, unknown 24.9
2007 Male, age 72, unknown 24.6
2825 Male, age 18, unknown 24.2
1817 Female, age 42, unknown 24.1
1815 Male, age 53, unknown 23.5
1944 Female, age 72, unknown 23.2
2407 Male, age 75, both hemispheres 21.3
2316 Male, age 76, right hemisphere 21.0
Red nucleus
nTPM: 24.1
1954 Female, age 42, unknown 25.5
2769 Male, age 72, unknown 25.3
1904 Male, age 53, unknown 25.1
2227 Male, age 72, unknown 25.1
1821 Female, age 72, unknown 25.0
2823 Male, age 76, right hemisphere 24.3
1865 Male, age 51, unknown 24.2
2503 Female, age 72, unknown 24.2
2725 Female, age 75, unknown 24.0
2785 Male, age 18, unknown 23.7
2588 Male, age 74, left hemisphere 22.4
2584 Male, age 75, left hemisphere 20.7
Substantia nigra
nTPM: 22.9
1851 Male, age 51, unknown 24.3
1916 Female, age 42, unknown 24.3
2590 Female, age 75, unknown 23.7
2699 Male, age 18, unknown 23.7
1889 Female, age 72, unknown 23.3
1941 Male, age 53, unknown 22.6
2583 Male, age 75, right hemisphere 22.3
2241 Male, age 72, unknown 21.5
2409 Female, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 21.4
Superior colliculus
nTPM: 22.7
2261 Male, age 18, unknown 23.9
1796 Male, age 53, unknown 23.5
2587 Male, age 74, left hemisphere 23.4
1995 Male, age 72, unknown 23.3
2668 Female, age 75, unknown 23.3
2087 Female, age 72, unknown 22.7
1895 Male, age 76, right hemisphere 22.3
1913 Female, age 42, unknown 22.1
2664 Male, age 75, both hemispheres 21.4
1839 Male, age 51, unknown 20.9
Ventral tegmental area
nTPM: 22.4
2410 Female, age 72, unknown 24.0
2218 Male, age 76, both hemispheres 23.0
1915 Female, age 42, unknown 22.4
2223 Female, age 72, unknown 22.3
1942 Male, age 51, unknown 21.5
2021 Male, age 53, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.9
Samples: 139

Max nTPM: 63.6
Min nTPM: 15.9
Std nTPM: 7.5
Median nTPM: 27.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 54.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 46.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 40.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 40.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 39.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 39.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 39.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.2
FF:10158-103A5 76 years, female 36.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.0
Pig sample Sample description nTPM
Midbrain
nTPM: 3.1
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.1
Sample A Female 3.5
Sample B Female 4.2
Sample C Male 2.1
Sample D Male 2.5
Periaqueductal gray
nTPM: 4.0
Samples: 3

Max nTPM: 4.7
Min nTPM: 3.5
Sample B Female 4.7
Sample C Male 3.7
Sample D Male 3.5
Substantia nigra
nTPM: 2.7
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.2
Sample A Female 2.6
Sample B Female 3.4
Sample C Male 2.2
Sample D Male 2.4
Superior colliculi
nTPM: 3.1
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.0
Sample A Female 3.0
Sample B Female 5.2
Sample C Male 2.0
Sample D Male 2.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.4
Samples: 4

Max nTPM: 50.8
Min nTPM: 42.4
Sample A Male 46.1
Sample B Male 42.4
Sample C Female 46.2
Sample D Female 50.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75695629 Antisense, RP_060518_04_A12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.