HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:79.5 nTPM
HPA:79.5 nTPM
GTEx:83.8 nTPM
FANTOM5:64.9 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:156.3 nTPM
Allen mouse:9.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050110Antibody CAB004293
Glial cells Not detectedHigh
Neuronal cells MediumMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.5
Sample id Sample description nTPM
Hippocampus
nTPM: 74.1
2529 Female, age 94, left hemisphere 84.2
1898 Male, age 80, left hemisphere 77.0
2621 Female, age 67, right hemisphere 72.5
2148 Female, age 91, left hemisphere 71.5
1911 Female, age 85, right hemisphere 70.0
1855 Male, age 76, left hemisphere 69.0
Dentate gyrus
nTPM: 73.4
2530 Female, age 94, left hemisphere 80.8
1927 Female, age 91, both hemispheres 78.1
2531 Female, age 67, both hemispheres 73.6
2010 Male, age 76, both hemispheres 71.8
2246 Female, age 85, both hemispheres 68.9
2528 Male, age 74, both hemispheres 67.3
Entorhinal gyrus
nTPM: 79.3
2764 Male, age 80, right hemisphere 92.7
1938 Female, age 85, left hemisphere 78.6
2686 Male, age 75, right hemisphere 78.1
2613 Female, age 94, left hemisphere 77.6
1787 Male, age 76, left hemisphere 77.4
2117 Female, age 91, right hemisphere 71.4
Hippocampus, CA1
nTPM: 77.0
2749 Male, age 80, left hemisphere 94.2
2082 Female, age 91, right hemisphere 77.7
2045 Male, age 76, both hemispheres 74.1
1873 Female, age 85, both hemispheres 71.9
2527 Male, age 74, both hemispheres 67.0
Hippocampus, CA2
nTPM: 76.9
1892 Male, age 76, both hemispheres 83.0
1963 Male, age 80, left hemisphere 79.2
2437 Female, age 94, left hemisphere 79.0
1940 Female, age 85, left hemisphere 76.3
2113 Female, age 91, right hemisphere 75.8
2249 Male, age 74, both hemispheres 67.9
Hippocampus, CA3
nTPM: 75.7
2620 Female, age 94, left hemisphere 86.0
2137 Male, age 80, left hemisphere 85.2
1867 Male, age 76, both hemispheres 75.2
2861 Female, age 67, both hemispheres 75.0
1891 Female, age 85, both hemispheres 71.5
2436 Male, age 74, both hemispheres 61.2
Parahippocampal cortex
nTPM: 78.2
2532 Female, age 72, left hemisphere 82.5
1990 Female, age 91, right hemisphere 81.2
1850 Male, age 80, both hemispheres 80.9
1933 Female, age 85, both hemispheres 80.3
2622 Female, age 67, right hemisphere 78.6
2245 Female, age 91, both hemispheres 77.9
2692 Male, age 74, both hemispheres 76.2
2018 Male, age 76, both hemispheres 75.0
2250 Female, age 67, right hemisphere 75.0
2693 Female, age 94, both hemispheres 74.2
Perirhinal gyrus
nTPM: 79.5
1847 Female, age 91, left hemisphere 85.7
1794 Male, age 80, right hemisphere 82.6
1841 Female, age 85, right hemisphere 82.2
2848 Male, age 76, right hemisphere 77.1
2521 Female, age 94, right hemisphere 70.0
Subiculum
nTPM: 75.3
1977 Female, age 85, both hemispheres 83.8
1901 Male, age 80, both hemispheres 80.0
2042 Male, age 76, both hemispheres 77.4
2619 Male, age 74, both hemispheres 72.0
2438 Female, age 94, left hemisphere 70.7
2729 Female, age 91, right hemisphere 68.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 83.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 83.8
Samples: 197

Max nTPM: 228.3
Min nTPM: 39.5
Std nTPM: 25.5
Median nTPM: 81.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 228.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 172.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 153.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 146.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 140.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 133.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 126.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 125.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 125.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 123.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 122.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 64.9
FF:10169-103B7 60 years, female 68.0
FF:10153-102I9 76 years, female 61.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 33.5
Samples: 4

Max nTPM: 46.1
Min nTPM: 26.6
Sample A Female 46.1
Sample B Female 33.4
Sample C Male 26.6
Sample D Male 27.7
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.6
Sample A Female 27.8
Sample B Female 22.7
Sample C Male 28.4
Sample D Male 22.6
Subiculum
nTPM: 27.2
Samples: 4

Max nTPM: 34.0
Min nTPM: 22.8
Sample A Female 34.0
Sample B Female 23.3
Sample C Male 28.6
Sample D Male 22.8
Ventral hippocampus
nTPM: 35.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 20.0
Sample A Female 36.7
Sample B Female 20.0
Sample C Male 42.3
Sample D Male 41.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 156.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 156.3
Samples: 4

Max nTPM: 195.0
Min nTPM: 139.7
Sample A Male 140.1
Sample B Male 150.3
Sample C Female 139.7
Sample D Female 195.0
Hippocampal formation
nTPM: 126.1
Samples: 4

Max nTPM: 135.6
Min nTPM: 121.1
Sample A Male 123.2
Sample B Male 121.1
Sample C Female 135.6
Sample D Female 124.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.9
2519 Antisense, RP_040324_01_B02, Mouse strain C57BL/6J (56 days, male) 19.8
2520 Antisense, RP_040324_01_B02, Mouse strain C57BL/6J (56 days, male) 17.5
887 Sense, RPS_Baylor_37031, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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