BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:38.5 nTPM
HPA:38.5 nTPM
GTEx:30.4 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:2.1 nTPM

CAUDATE - Antibody stainingi
Antibody HPA004144
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.3
1854 Male, age 80, left hemisphere 41.4
1857 Female, age 85, left hemisphere 39.4
2846 Female, age 79, unknown 39.2
2288 Male, age 75, left hemisphere 36.6
2481 Female, age 94, left hemisphere 36.5
2289 Male, age 61, right hemisphere 36.3
2290 Female, age 72, unknown 35.1
1781 Male, age 74, unknown 34.1
Claustrum
nTPM: 33.7
2196 Female, age 79, unknown 37.8
1956 Male, age 74, unknown 37.0
2645 Female, age 72, unknown 35.2
2198 Male, age 80, both hemispheres 35.1
2392 Female, age 94, both hemispheres 32.9
2292 Female, age 85, both hemispheres 32.3
2491 Male, age 75, both hemispheres 31.5
2568 Male, age 61, both hemispheres 31.1
2284 Female, age 91, both hemispheres 30.2
Globus pallidus, externus
nTPM: 35.5
2646 Male, age 61, right hemisphere 41.7
2772 Female, age 79, unknown 34.3
1996 Male, age 80, right hemisphere 34.0
2395 Male, age 75, both hemispheres 34.0
2567 Female, age 72, unknown 33.4
Globus pallidus, internus
nTPM: 36.7
2566 Female, age 72, unknown 39.6
2778 Female, age 91, both hemispheres 38.6
2287 Male, age 75, right hemisphere 37.7
2483 Female, age 94, right hemisphere 37.3
1818 Male, age 74, unknown 37.1
2037 Male, age 80, right hemisphere 35.5
2111 Female, age 85, right hemisphere 31.2
Nucleus accumbens
nTPM: 38.5
2391 Female, age 94, left hemisphere 42.6
1856 Female, age 91, right hemisphere 39.3
1783 Male, age 74, unknown 39.2
1806 Female, age 85, left hemisphere 38.7
2698 Female, age 72, unknown 37.9
2286 Male, age 75, left hemisphere 37.3
2732 Male, age 80, right hemisphere 37.2
2824 Male, age 61, right hemisphere 35.5
Nucleus basalis of Meynert
nTPM: 36.6
2821 Male, age 75, both hemispheres 40.1
2569 Male, age 61, both hemispheres 39.0
2393 Male, age 80, right hemisphere 34.7
2484 Female, age 94, left hemisphere 32.4
Nucleus of the diagonal band
nTPM: 37.2
1979 Male, age 74, unknown 42.9
2775 Male, age 80, right hemisphere 38.7
2195 Female, age 85, both hemispheres 37.8
1812 Female, age 91, both hemispheres 34.9
2029 Male, age 61, right hemisphere 31.8
Olfactory tubercle
nTPM: 33.5
1846 Male, age 80, right hemisphere 34.9
1998 Female, age 91, both hemispheres 34.6
2856 Male, age 75, right hemisphere 32.7
2487 Female, age 94, left hemisphere 31.9
Putamen
nTPM: 37.0
1937 Female, age 91, right hemisphere 40.6
2482 Female, age 94, left hemisphere 38.8
2647 Male, age 75, left hemisphere 36.6
1838 Male, age 80, right hemisphere 36.3
1829 Male, age 74, unknown 36.2
2466 Female, age 79, unknown 36.0
2489 Female, age 72, unknown 34.4
Septal nuclei
nTPM: 35.5
2199 Male, age 80, right hemisphere 38.5
1960 Male, age 74, unknown 37.1
2629 Female, age 94, right hemisphere 36.6
2059 Female, age 85, both hemispheres 35.8
2009 Female, age 91, both hemispheres 35.0
2031 Female, age 72, unknown 33.4
2394 Male, age 61, left hemisphere 31.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.4
Samples: 246

Max nTPM: 55.6
Min nTPM: 17.3
Std nTPM: 4.8
Median nTPM: 27.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 55.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 49.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 41.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 39.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 39.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 38.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 37.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 37.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 36.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.4
Samples: 246

Max nTPM: 44.8
Min nTPM: 18.0
Std nTPM: 5.2
Median nTPM: 30.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 44.8
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 41.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 41.6
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 41.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 40.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 40.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 39.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 39.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 39.4
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 39.4
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 39.0
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Brain - Putamen (basal ganglia)
Average nTPM: 25.8
Samples: 205

Max nTPM: 35.6
Min nTPM: 16.0
Std nTPM: 3.6
Median nTPM: 25.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 35.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 35.2
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 35.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 34.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 34.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 33.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 33.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 33.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 33.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 32.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 32.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 60.0
FF:10164-103B2 76 years, female 60.0
Globus pallidus
Scaled Tags Per Million: 42.0
FF:10175-103C4 60 years, female 43.4
FF:10161-103A8 76 years, female 40.6
Nucleus accumbens
Scaled Tags Per Million: 60.2
FF:10037-101F1 23-56 years, mixed 60.2
Putamen
Scaled Tags Per Million: 45.1
FF:10176-103C5 60 years, female 45.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.8
Sample A Female 2.3
Sample B Female 2.0
Sample C Male 2.3
Sample D Male 1.8
Putamen
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 2.0
Sample C Male 1.5
Sample D Male 1.7
Septum
nTPM: 1.7
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.9
Sample A Female 1.9
Sample B Female 2.0
Sample C Male 0.9
Sample D Male 2.0
Ventral pallidum
nTPM: 1.8
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.0
Sample A Female 2.8
Sample B Female 1.6
Sample C Male 1.0
Sample D Male 1.6

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The Human Protein Atlas

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