BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:56.8 nTPM
HPA:56.8 nTPM
GTEx:71.7 nTPM
FANTOM5:144.7 Scaled Tags Per Million
Pig:14.9 nTPM
Mouse:160.4 nTPM
Allen mouse:8.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044121Antibody HPA060118
Glial cells Not detectedLow
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.2
2290 Female, age 72, unknown 57.2
1854 Male, age 80, left hemisphere 56.9
1857 Female, age 85, left hemisphere 56.5
2846 Female, age 79, unknown 56.4
2288 Male, age 75, left hemisphere 54.1
2481 Female, age 94, left hemisphere 53.7
1781 Male, age 74, unknown 53.5
2289 Male, age 61, right hemisphere 53.1
Claustrum
nTPM: 54.0
2392 Female, age 94, both hemispheres 55.3
1956 Male, age 74, unknown 55.2
2196 Female, age 79, unknown 55.2
2568 Male, age 61, both hemispheres 54.8
2198 Male, age 80, both hemispheres 54.0
2645 Female, age 72, unknown 53.4
2292 Female, age 85, both hemispheres 53.3
2491 Male, age 75, both hemispheres 52.6
2284 Female, age 91, both hemispheres 52.0
Globus pallidus, externus
nTPM: 55.5
2395 Male, age 75, both hemispheres 56.7
1996 Male, age 80, right hemisphere 55.8
2646 Male, age 61, right hemisphere 55.6
2567 Female, age 72, unknown 54.9
2772 Female, age 79, unknown 54.3
Globus pallidus, internus
nTPM: 55.3
2287 Male, age 75, right hemisphere 58.0
2483 Female, age 94, right hemisphere 55.9
1818 Male, age 74, unknown 55.3
2566 Female, age 72, unknown 55.2
2037 Male, age 80, right hemisphere 54.8
2778 Female, age 91, both hemispheres 54.8
2111 Female, age 85, right hemisphere 53.3
Nucleus accumbens
nTPM: 55.6
2698 Female, age 72, unknown 57.9
1856 Female, age 91, right hemisphere 57.8
2286 Male, age 75, left hemisphere 56.1
2391 Female, age 94, left hemisphere 55.6
1806 Female, age 85, left hemisphere 55.3
1783 Male, age 74, unknown 55.1
2824 Male, age 61, right hemisphere 54.3
2732 Male, age 80, right hemisphere 52.8
Nucleus basalis of Meynert
nTPM: 54.5
2393 Male, age 80, right hemisphere 55.7
2821 Male, age 75, both hemispheres 54.7
2484 Female, age 94, left hemisphere 53.8
2569 Male, age 61, both hemispheres 53.7
Nucleus of the diagonal band
nTPM: 56.8
1812 Female, age 91, both hemispheres 58.0
2775 Male, age 80, right hemisphere 57.6
2195 Female, age 85, both hemispheres 56.6
2029 Male, age 61, right hemisphere 56.3
1979 Male, age 74, unknown 55.4
Olfactory tubercle
nTPM: 54.3
1846 Male, age 80, right hemisphere 55.9
2856 Male, age 75, right hemisphere 54.2
1998 Female, age 91, both hemispheres 53.9
2487 Female, age 94, left hemisphere 53.1
Putamen
nTPM: 55.6
1829 Male, age 74, unknown 57.6
2647 Male, age 75, left hemisphere 56.8
1838 Male, age 80, right hemisphere 56.6
2466 Female, age 79, unknown 56.1
2489 Female, age 72, unknown 55.0
2482 Female, age 94, left hemisphere 54.1
1937 Female, age 91, right hemisphere 53.0
Septal nuclei
nTPM: 55.3
2031 Female, age 72, unknown 56.9
1960 Male, age 74, unknown 55.9
2199 Male, age 80, right hemisphere 55.5
2059 Female, age 85, both hemispheres 55.3
2009 Female, age 91, both hemispheres 54.7
2394 Male, age 61, left hemisphere 54.5
2629 Female, age 94, right hemisphere 54.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 71.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 62.9
Samples: 246

Max nTPM: 141.8
Min nTPM: 27.7
Std nTPM: 17.4
Median nTPM: 60.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 141.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 126.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 119.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 115.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 112.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 108.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 107.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 106.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 102.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 100.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.6
Samples: 246

Max nTPM: 159.8
Min nTPM: 9.6
Std nTPM: 20.2
Median nTPM: 64.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 159.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 158.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 137.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 129.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 129.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 116.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 112.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 112.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 112.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 105.6
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 104.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 71.7
Samples: 205

Max nTPM: 171.4
Min nTPM: 37.4
Std nTPM: 20.5
Median nTPM: 67.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 171.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 142.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 127.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 127.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 126.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 124.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 118.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 113.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 113.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 113.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 113.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.0
FF:10164-103B2 76 years, female 105.0
Globus pallidus
Scaled Tags Per Million: 115.8
FF:10175-103C4 60 years, female 134.1
FF:10161-103A8 76 years, female 97.5
Nucleus accumbens
Scaled Tags Per Million: 96.2
FF:10037-101F1 23-56 years, mixed 96.2
Putamen
Scaled Tags Per Million: 144.7
FF:10176-103C5 60 years, female 144.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.9
Pig sample Sample description nTPM
Caudate
nTPM: 13.9
Samples: 4

Max nTPM: 14.7
Min nTPM: 13.6
Sample A Female 14.7
Sample B Female 13.6
Sample C Male 13.7
Sample D Male 13.7
Putamen
nTPM: 14.9
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.7
Sample A Female 14.8
Sample B Female 13.7
Sample C Male 16.9
Sample D Male 14.2
Septum
nTPM: 14.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 12.2
Sample A Female 17.3
Sample B Female 14.0
Sample C Male 14.8
Sample D Male 12.2
Ventral pallidum
nTPM: 14.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 13.2
Sample A Female 15.7
Sample B Female 13.2
Sample C Male 14.1
Sample D Male 13.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 160.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 160.4
Samples: 4

Max nTPM: 174.9
Min nTPM: 148.2
Sample A Male 158.5
Sample B Male 174.9
Sample C Female 148.2
Sample D Female 160.1
Septum
nTPM: 102.4
Samples: 4

Max nTPM: 107.5
Min nTPM: 93.5
Sample A Male 102.6
Sample B Male 107.5
Sample C Female 106.1
Sample D Female 93.5
Ventral forebrain
nTPM: 104.3
Samples: 4

Max nTPM: 118.5
Min nTPM: 94.8
Sample A Male 94.8
Sample B Male 107.4
Sample C Female 118.5
Sample D Female 96.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.8
67978762 Antisense, RP_040923_01_H01, Mouse strain C57BL/6J (56 days, male) 8.8
Pallidum
Expression energy: 7.0
67978762 Antisense, RP_040923_01_H01, Mouse strain C57BL/6J (56 days, male) 7.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.