MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.8 nTPM
HPA:95.8 nTPM
GTEx:176.4 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:38.2 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2586 Male, age 75, left hemisphere 113.9
2666 Male, age 74, left hemisphere 97.9
2828 Female, age 72, unknown 94.0
2019 Male, age 18, unknown 92.9
1833 Male, age 53, unknown 87.2
1830 Male, age 51, unknown 86.9
1827 Male, age 72, unknown 84.5
1870 Female, age 42, unknown 84.1
2411 Female, age 72, unknown 82.3
2219 Male, age 76, both hemispheres 73.1
Dorsal raphe nucleus
nTPM: 77.8
2750 Male, age 76, both hemispheres 81.7
2016 Female, age 72, unknown 80.7
1828 Male, age 53, unknown 78.9
2047 Male, age 72, unknown 77.9
2298 Female, age 72, unknown 69.6
Inferior colliculus
nTPM: 77.2
1848 Female, age 42, unknown 83.9
1890 Male, age 53, unknown 78.2
2849 Male, age 72, unknown 76.9
2097 Female, age 72, unknown 70.0
Median raphe nucleus
nTPM: 70.3
2220 Male, age 76, midline 70.3
Pedunculopontine tegmental nucleus
nTPM: 73.0
2334 Male, age 80, both hemispheres 78.4
1921 Female, age 85, both hemispheres 75.7
2338 Male, age 61, both hemispheres 64.9
Periaquaductal grey, anterior
nTPM: 85.1
2502 Female, age 75, unknown 86.9
1947 Male, age 18, unknown 86.7
1795 Male, age 51, unknown 81.7
Periaquaductal grey, dorsal
nTPM: 74.6
1840 Male, age 53, unknown 76.7
2464 Female, age 72, unknown 76.2
1831 Male, age 72, unknown 76.0
2850 Male, age 76, both hemispheres 69.3
Periaquaductal grey, lateral
nTPM: 76.1
2053 Male, age 18, unknown 80.5
2140 Male, age 76, both hemispheres 76.4
2272 Male, age 74, both hemispheres 71.4
Pretectal area
nTPM: 87.3
2007 Male, age 72, unknown 102.6
1817 Female, age 42, unknown 96.6
1815 Male, age 53, unknown 95.9
2407 Male, age 75, both hemispheres 90.8
1816 Male, age 51, unknown 90.1
1944 Female, age 72, unknown 88.6
2316 Male, age 76, right hemisphere 88.6
2667 Female, age 75, unknown 85.8
2825 Male, age 18, unknown 78.8
2224 Female, age 72, unknown 72.7
2273 Male, age 74, both hemispheres 69.8
Red nucleus
nTPM: 95.8
2584 Male, age 75, left hemisphere 102.2
2785 Male, age 18, unknown 101.7
1904 Male, age 53, unknown 101.1
2503 Female, age 72, unknown 99.7
2588 Male, age 74, left hemisphere 99.2
2823 Male, age 76, right hemisphere 97.3
2769 Male, age 72, unknown 96.8
2227 Male, age 72, unknown 95.0
1865 Male, age 51, unknown 94.0
1821 Female, age 72, unknown 89.4
1954 Female, age 42, unknown 87.6
2725 Female, age 75, unknown 85.2
Substantia nigra
nTPM: 87.2
1889 Female, age 72, unknown 94.5
2583 Male, age 75, right hemisphere 93.6
1916 Female, age 42, unknown 92.4
1851 Male, age 51, unknown 91.7
2409 Female, age 72, unknown 89.0
2665 Male, age 74, both hemispheres 87.4
2590 Female, age 75, unknown 87.0
2699 Male, age 18, unknown 86.4
2241 Male, age 72, unknown 75.6
1941 Male, age 53, unknown 74.7
Superior colliculus
nTPM: 89.1
2664 Male, age 75, both hemispheres 104.5
2668 Female, age 75, unknown 97.9
1895 Male, age 76, right hemisphere 91.3
1796 Male, age 53, unknown 88.7
1995 Male, age 72, unknown 88.1
1839 Male, age 51, unknown 86.5
2087 Female, age 72, unknown 85.4
2587 Male, age 74, left hemisphere 84.4
1913 Female, age 42, unknown 82.5
2261 Male, age 18, unknown 81.5
Ventral tegmental area
nTPM: 81.8
2410 Female, age 72, unknown 91.0
1915 Female, age 42, unknown 83.9
1942 Male, age 51, unknown 82.1
2218 Male, age 76, both hemispheres 79.6
2021 Male, age 53, unknown 77.8
2223 Female, age 72, unknown 76.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 176.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 176.4
Samples: 139

Max nTPM: 323.9
Min nTPM: 87.7
Std nTPM: 42.2
Median nTPM: 168.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 323.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 297.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 277.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 271.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 261.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 261.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 259.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 254.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 249.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 249.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 245.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.9
FF:10158-103A5 76 years, female 97.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 35.7
Min nTPM: 10.3
Sample A Female 10.3
Sample B Female 16.1
Sample C Male 35.7
Sample D Male 19.4
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 19.9
Min nTPM: 12.8
Sample B Female 14.8
Sample C Male 19.9
Sample D Male 12.8
Substantia nigra
nTPM: 23.1
Samples: 4

Max nTPM: 30.8
Min nTPM: 10.7
Sample A Female 30.8
Sample B Female 21.7
Sample C Male 29.3
Sample D Male 10.7
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 28.9
Min nTPM: 19.7
Sample A Female 22.3
Sample B Female 19.7
Sample C Male 28.9
Sample D Male 21.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 32.9
Sample A Male 35.8
Sample B Male 32.9
Sample C Female 44.3
Sample D Female 39.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
71923998 Antisense, RP_051017_02_H03, Mouse strain C57BL/6J (56 days, male) 3.4
75694351 Antisense, RP_060518_03_F03, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.