MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:138.4 nTPM
HPA:138.4 nTPM
GTEx:113.7 nTPM
FANTOM5:122.8 Scaled Tags Per Million
Mouse:169.6 nTPM
Allen mouse:13.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 138.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.4
2411 Female, age 72, unknown 140.9
1870 Female, age 42, unknown 134.2
2019 Male, age 18, unknown 133.8
1827 Male, age 72, unknown 133.6
2219 Male, age 76, both hemispheres 130.1
2828 Female, age 72, unknown 130.0
1833 Male, age 53, unknown 129.1
2666 Male, age 74, left hemisphere 127.9
1830 Male, age 51, unknown 127.4
2586 Male, age 75, left hemisphere 127.0
Dorsal raphe nucleus
nTPM: 137.9
2298 Female, age 72, unknown 148.1
2047 Male, age 72, unknown 142.9
2750 Male, age 76, both hemispheres 135.3
1828 Male, age 53, unknown 134.8
2016 Female, age 72, unknown 128.2
Inferior colliculus
nTPM: 129.8
2097 Female, age 72, unknown 137.0
1890 Male, age 53, unknown 130.4
1848 Female, age 42, unknown 128.6
2849 Male, age 72, unknown 123.1
Median raphe nucleus
nTPM: 133.3
2220 Male, age 76, midline 133.3
Pedunculopontine tegmental nucleus
nTPM: 132.9
2334 Male, age 80, both hemispheres 136.6
1921 Female, age 85, both hemispheres 132.6
2338 Male, age 61, both hemispheres 129.6
Periaquaductal grey, anterior
nTPM: 133.1
1947 Male, age 18, unknown 137.8
2502 Female, age 75, unknown 132.8
1795 Male, age 51, unknown 128.8
Periaquaductal grey, dorsal
nTPM: 125.9
1840 Male, age 53, unknown 130.3
2464 Female, age 72, unknown 128.1
2850 Male, age 76, both hemispheres 122.7
1831 Male, age 72, unknown 122.5
Periaquaductal grey, lateral
nTPM: 126.9
2053 Male, age 18, unknown 129.0
2272 Male, age 74, both hemispheres 127.4
2140 Male, age 76, both hemispheres 124.3
Pretectal area
nTPM: 130.6
2224 Female, age 72, unknown 134.6
2667 Female, age 75, unknown 134.3
1817 Female, age 42, unknown 133.5
2007 Male, age 72, unknown 133.5
1816 Male, age 51, unknown 132.1
2273 Male, age 74, both hemispheres 131.0
1944 Female, age 72, unknown 129.8
1815 Male, age 53, unknown 129.2
2825 Male, age 18, unknown 128.9
2316 Male, age 76, right hemisphere 126.0
2407 Male, age 75, both hemispheres 124.0
Red nucleus
nTPM: 132.3
1821 Female, age 72, unknown 143.5
1865 Male, age 51, unknown 135.0
1904 Male, age 53, unknown 133.5
2227 Male, age 72, unknown 133.5
1954 Female, age 42, unknown 133.4
2503 Female, age 72, unknown 132.5
2769 Male, age 72, unknown 132.1
2588 Male, age 74, left hemisphere 130.0
2725 Female, age 75, unknown 129.9
2785 Male, age 18, unknown 129.9
2823 Male, age 76, right hemisphere 128.5
2584 Male, age 75, left hemisphere 125.9
Substantia nigra
nTPM: 138.4
1916 Female, age 42, unknown 151.7
1851 Male, age 51, unknown 149.6
2241 Male, age 72, unknown 144.5
2409 Female, age 72, unknown 139.8
1941 Male, age 53, unknown 136.8
1889 Female, age 72, unknown 135.2
2590 Female, age 75, unknown 134.9
2665 Male, age 74, both hemispheres 131.9
2699 Male, age 18, unknown 131.4
2583 Male, age 75, right hemisphere 128.5
Superior colliculus
nTPM: 128.7
2587 Male, age 74, left hemisphere 134.5
1796 Male, age 53, unknown 132.5
1895 Male, age 76, right hemisphere 131.2
2668 Female, age 75, unknown 129.9
2261 Male, age 18, unknown 129.0
2087 Female, age 72, unknown 127.4
1839 Male, age 51, unknown 126.7
1913 Female, age 42, unknown 126.2
2664 Male, age 75, both hemispheres 126.0
1995 Male, age 72, unknown 124.0
Ventral tegmental area
nTPM: 136.2
1915 Female, age 42, unknown 142.8
2410 Female, age 72, unknown 142.4
2223 Female, age 72, unknown 135.6
1942 Male, age 51, unknown 132.8
2218 Male, age 76, both hemispheres 132.5
2021 Male, age 53, unknown 131.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.7
Samples: 139

Max nTPM: 195.2
Min nTPM: 70.9
Std nTPM: 25.3
Median nTPM: 110.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 195.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 189.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 188.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 180.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 170.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 168.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 164.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 161.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 157.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 154.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 153.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.8
FF:10158-103A5 76 years, female 122.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 169.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 169.6
Samples: 4

Max nTPM: 187.3
Min nTPM: 154.6
Sample A Male 187.3
Sample B Male 161.6
Sample C Female 154.6
Sample D Female 175.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
576433 Antisense, RP_040826_01_H09, Mouse strain C57BL/6J (56 days, male) 16.3
81599656 Antisense, RP_071213_04_B01, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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