BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:21.7 nTPM
HPA:21.7 nTPM
GTEx:28.1 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:62.9 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031157
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.1
1781 Male, age 74, unknown 22.2
2290 Female, age 72, unknown 21.3
1857 Female, age 85, left hemisphere 20.7
2846 Female, age 79, unknown 20.7
2288 Male, age 75, left hemisphere 19.2
2481 Female, age 94, left hemisphere 19.0
1854 Male, age 80, left hemisphere 18.9
2289 Male, age 61, right hemisphere 18.7
Claustrum
nTPM: 21.2
2645 Female, age 72, unknown 23.0
2568 Male, age 61, both hemispheres 22.9
2392 Female, age 94, both hemispheres 21.9
2284 Female, age 91, both hemispheres 21.8
1956 Male, age 74, unknown 21.2
2198 Male, age 80, both hemispheres 21.2
2196 Female, age 79, unknown 20.0
2292 Female, age 85, both hemispheres 19.8
2491 Male, age 75, both hemispheres 19.2
Globus pallidus, externus
nTPM: 20.2
2646 Male, age 61, right hemisphere 23.1
2395 Male, age 75, both hemispheres 20.4
1996 Male, age 80, right hemisphere 20.3
2567 Female, age 72, unknown 18.9
2772 Female, age 79, unknown 18.5
Globus pallidus, internus
nTPM: 20.9
2483 Female, age 94, right hemisphere 21.5
2566 Female, age 72, unknown 21.5
2778 Female, age 91, both hemispheres 21.2
2111 Female, age 85, right hemisphere 20.7
2287 Male, age 75, right hemisphere 20.7
2037 Male, age 80, right hemisphere 20.6
1818 Male, age 74, unknown 20.3
Nucleus accumbens
nTPM: 19.1
1783 Male, age 74, unknown 22.0
1806 Female, age 85, left hemisphere 20.3
2286 Male, age 75, left hemisphere 20.1
2391 Female, age 94, left hemisphere 20.0
2824 Male, age 61, right hemisphere 19.2
2698 Female, age 72, unknown 18.5
2732 Male, age 80, right hemisphere 18.2
1856 Female, age 91, right hemisphere 14.7
Nucleus basalis of Meynert
nTPM: 18.9
2569 Male, age 61, both hemispheres 22.8
2393 Male, age 80, right hemisphere 19.1
2484 Female, age 94, left hemisphere 18.5
2821 Male, age 75, both hemispheres 15.3
Nucleus of the diagonal band
nTPM: 21.7
2195 Female, age 85, both hemispheres 22.4
2775 Male, age 80, right hemisphere 22.2
1812 Female, age 91, both hemispheres 21.4
1979 Male, age 74, unknown 21.4
2029 Male, age 61, right hemisphere 21.0
Olfactory tubercle
nTPM: 21.0
1998 Female, age 91, both hemispheres 21.3
2856 Male, age 75, right hemisphere 21.2
2487 Female, age 94, left hemisphere 20.9
1846 Male, age 80, right hemisphere 20.7
Putamen
nTPM: 20.1
2647 Male, age 75, left hemisphere 23.1
2489 Female, age 72, unknown 21.9
2466 Female, age 79, unknown 21.5
2482 Female, age 94, left hemisphere 20.4
1829 Male, age 74, unknown 19.0
1838 Male, age 80, right hemisphere 18.0
1937 Female, age 91, right hemisphere 16.8
Septal nuclei
nTPM: 21.3
1960 Male, age 74, unknown 24.8
2031 Female, age 72, unknown 24.5
2059 Female, age 85, both hemispheres 21.3
2009 Female, age 91, both hemispheres 21.0
2199 Male, age 80, right hemisphere 19.1
2394 Male, age 61, left hemisphere 19.1
2629 Female, age 94, right hemisphere 19.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 39.8
Min nTPM: 18.1
Std nTPM: 4.2
Median nTPM: 27.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 39.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 39.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 38.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 38.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 38.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 38.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 37.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 37.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 36.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 36.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.1
Samples: 246

Max nTPM: 43.2
Min nTPM: 15.7
Std nTPM: 4.7
Median nTPM: 28.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 43.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 42.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 42.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 39.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 39.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 38.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 38.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 38.6
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 37.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 37.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 37.3
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Brain - Putamen (basal ganglia)
Average nTPM: 27.7
Samples: 205

Max nTPM: 38.6
Min nTPM: 20.3
Std nTPM: 3.7
Median nTPM: 27.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 38.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 38.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 38.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 37.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 37.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 36.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 36.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 36.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 36.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 35.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 35.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.5
FF:10164-103B2 76 years, female 34.5
Globus pallidus
Scaled Tags Per Million: 33.3
FF:10161-103A8 76 years, female 39.0
FF:10175-103C4 60 years, female 27.6
Nucleus accumbens
Scaled Tags Per Million: 46.0
FF:10037-101F1 23-56 years, mixed 46.0
Putamen
Scaled Tags Per Million: 42.8
FF:10176-103C5 60 years, female 42.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Caudate
nTPM: 16.2
Samples: 4

Max nTPM: 17.5
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 16.2
Sample C Male 17.5
Sample D Male 16.7
Putamen
nTPM: 17.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 16.1
Sample C Male 19.0
Sample D Male 20.4
Septum
nTPM: 16.0
Samples: 4

Max nTPM: 17.2
Min nTPM: 15.5
Sample A Female 15.8
Sample B Female 15.6
Sample C Male 15.5
Sample D Male 17.2
Ventral pallidum
nTPM: 16.9
Samples: 4

Max nTPM: 18.8
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 16.7
Sample C Male 18.8
Sample D Male 17.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 62.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 62.9
Samples: 4

Max nTPM: 68.2
Min nTPM: 59.8
Sample A Male 68.2
Sample B Male 62.6
Sample C Female 59.8
Sample D Female 60.9
Septum
nTPM: 52.4
Samples: 4

Max nTPM: 58.0
Min nTPM: 44.8
Sample A Male 54.0
Sample B Male 58.0
Sample C Female 52.9
Sample D Female 44.8
Ventral forebrain
nTPM: 55.1
Samples: 4

Max nTPM: 57.5
Min nTPM: 52.4
Sample A Male 57.5
Sample B Male 56.0
Sample C Female 52.4
Sample D Female 54.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
79536535 Antisense, RP_071018_01_A09, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 1.5
79536535 Antisense, RP_071018_01_A09, Mouse strain C57BL/6J (56 days, male) 1.5

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