HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:27.6 nTPM
HPA:27.6 nTPM
GTEx:22.5 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:5.9 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038892Antibody HPA038893
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.6
Sample id Sample description nTPM
Hippocampus
nTPM: 25.6
2529 Female, age 94, left hemisphere 27.0
1898 Male, age 80, left hemisphere 25.9
2621 Female, age 67, right hemisphere 25.9
2148 Female, age 91, left hemisphere 25.2
1911 Female, age 85, right hemisphere 25.1
1855 Male, age 76, left hemisphere 24.3
Dentate gyrus
nTPM: 26.0
2528 Male, age 74, both hemispheres 27.3
2530 Female, age 94, left hemisphere 27.0
2531 Female, age 67, both hemispheres 25.9
2010 Male, age 76, both hemispheres 25.8
2246 Female, age 85, both hemispheres 25.8
1927 Female, age 91, both hemispheres 24.1
Entorhinal gyrus
nTPM: 27.6
2686 Male, age 75, right hemisphere 31.1
2764 Male, age 80, right hemisphere 29.0
2117 Female, age 91, right hemisphere 28.2
2613 Female, age 94, left hemisphere 27.1
1787 Male, age 76, left hemisphere 26.4
1938 Female, age 85, left hemisphere 23.8
Hippocampus, CA1
nTPM: 24.5
2082 Female, age 91, right hemisphere 26.4
2527 Male, age 74, both hemispheres 26.2
1873 Female, age 85, both hemispheres 25.2
2749 Male, age 80, left hemisphere 23.2
2045 Male, age 76, both hemispheres 21.3
Hippocampus, CA2
nTPM: 26.4
2437 Female, age 94, left hemisphere 28.4
1963 Male, age 80, left hemisphere 27.4
1940 Female, age 85, left hemisphere 26.8
2113 Female, age 91, right hemisphere 26.0
2249 Male, age 74, both hemispheres 26.0
1892 Male, age 76, both hemispheres 23.6
Hippocampus, CA3
nTPM: 25.6
2861 Female, age 67, both hemispheres 28.1
1891 Female, age 85, both hemispheres 27.1
2620 Female, age 94, left hemisphere 26.1
2137 Male, age 80, left hemisphere 24.4
1867 Male, age 76, both hemispheres 24.2
2436 Male, age 74, both hemispheres 23.8
Parahippocampal cortex
nTPM: 27.6
2622 Female, age 67, right hemisphere 30.4
2693 Female, age 94, both hemispheres 28.8
2692 Male, age 74, both hemispheres 28.6
2532 Female, age 72, left hemisphere 28.5
2250 Female, age 67, right hemisphere 27.8
1990 Female, age 91, right hemisphere 27.5
1850 Male, age 80, both hemispheres 26.8
2245 Female, age 91, both hemispheres 26.2
1933 Female, age 85, both hemispheres 25.9
2018 Male, age 76, both hemispheres 25.4
Perirhinal gyrus
nTPM: 26.3
2521 Female, age 94, right hemisphere 27.8
1794 Male, age 80, right hemisphere 26.6
2848 Male, age 76, right hemisphere 25.9
1841 Female, age 85, right hemisphere 25.6
1847 Female, age 91, left hemisphere 25.5
Subiculum
nTPM: 27.4
2042 Male, age 76, both hemispheres 30.1
2619 Male, age 74, both hemispheres 28.9
2438 Female, age 94, left hemisphere 26.7
1977 Female, age 85, both hemispheres 26.5
1901 Male, age 80, both hemispheres 26.3
2729 Female, age 91, right hemisphere 26.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.5
Samples: 197

Max nTPM: 43.6
Min nTPM: 8.9
Std nTPM: 5.2
Median nTPM: 21.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 43.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 42.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 41.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 38.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 38.0
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 37.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 35.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 33.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 32.6
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 31.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 31.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 45.6
FF:10153-102I9 76 years, female 62.0
FF:10169-103B7 60 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.8
Sample A Female 2.4
Sample B Female 1.8
Sample C Male 2.1
Sample D Male 2.6
Entorhinal cortex
nTPM: 2.8
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.0
Sample A Female 3.3
Sample B Female 2.0
Sample C Male 3.7
Sample D Male 2.0
Subiculum
nTPM: 3.1
Samples: 4

Max nTPM: 3.7
Min nTPM: 2.2
Sample A Female 3.6
Sample B Female 2.2
Sample C Male 2.9
Sample D Male 3.7
Ventral hippocampus
nTPM: 2.7
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 2.3
Sample C Male 3.6
Sample D Male 2.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.9
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.5
Sample A Male 6.6
Sample B Male 6.9
Sample C Female 5.5
Sample D Female 4.5
Hippocampal formation
nTPM: 5.6
Samples: 4

Max nTPM: 7.2
Min nTPM: 4.5
Sample A Male 7.2
Sample B Male 6.1
Sample C Female 4.5
Sample D Female 4.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
71656803 Antisense, RP_050927_04_D02, Mouse strain C57BL/6J (56 days, male) 1.7
74274686 Antisense, RP_050927_04_D02, Mouse strain C57BL/6J (56 days, male) 0.7

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