BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:41.1 nTPM
HPA:41.1 nTPM
GTEx:44.2 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:46.4 nTPM
Allen mouse:1.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041225Antibody HPA044675
Glial cells LowNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 41.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.4
1857 Female, age 85, left hemisphere 41.0
2290 Female, age 72, unknown 40.9
2846 Female, age 79, unknown 40.8
1854 Male, age 80, left hemisphere 40.0
2481 Female, age 94, left hemisphere 39.6
1781 Male, age 74, unknown 38.9
2288 Male, age 75, left hemisphere 38.0
2289 Male, age 61, right hemisphere 35.6
Claustrum
nTPM: 38.5
2196 Female, age 79, unknown 40.6
2198 Male, age 80, both hemispheres 40.3
1956 Male, age 74, unknown 39.3
2491 Male, age 75, both hemispheres 38.4
2568 Male, age 61, both hemispheres 38.4
2292 Female, age 85, both hemispheres 38.2
2392 Female, age 94, both hemispheres 37.3
2284 Female, age 91, both hemispheres 37.1
2645 Female, age 72, unknown 36.5
Globus pallidus, externus
nTPM: 40.7
1996 Male, age 80, right hemisphere 42.9
2772 Female, age 79, unknown 42.9
2395 Male, age 75, both hemispheres 42.1
2567 Female, age 72, unknown 37.8
2646 Male, age 61, right hemisphere 37.8
Globus pallidus, internus
nTPM: 41.1
2287 Male, age 75, right hemisphere 45.6
2483 Female, age 94, right hemisphere 43.0
2778 Female, age 91, both hemispheres 42.8
2037 Male, age 80, right hemisphere 40.0
2111 Female, age 85, right hemisphere 39.9
2566 Female, age 72, unknown 38.2
1818 Male, age 74, unknown 38.0
Nucleus accumbens
nTPM: 40.1
1783 Male, age 74, unknown 43.2
1856 Female, age 91, right hemisphere 41.9
1806 Female, age 85, left hemisphere 41.3
2698 Female, age 72, unknown 40.8
2286 Male, age 75, left hemisphere 39.2
2391 Female, age 94, left hemisphere 39.1
2824 Male, age 61, right hemisphere 37.7
2732 Male, age 80, right hemisphere 37.6
Nucleus basalis of Meynert
nTPM: 38.0
2484 Female, age 94, left hemisphere 38.5
2393 Male, age 80, right hemisphere 38.0
2821 Male, age 75, both hemispheres 38.0
2569 Male, age 61, both hemispheres 37.5
Nucleus of the diagonal band
nTPM: 37.4
2775 Male, age 80, right hemisphere 39.8
1812 Female, age 91, both hemispheres 38.2
2195 Female, age 85, both hemispheres 37.7
2029 Male, age 61, right hemisphere 35.8
1979 Male, age 74, unknown 35.7
Olfactory tubercle
nTPM: 36.3
1846 Male, age 80, right hemisphere 37.6
1998 Female, age 91, both hemispheres 36.7
2487 Female, age 94, left hemisphere 36.2
2856 Male, age 75, right hemisphere 34.7
Putamen
nTPM: 39.4
2466 Female, age 79, unknown 41.8
1937 Female, age 91, right hemisphere 40.1
2482 Female, age 94, left hemisphere 40.0
1838 Male, age 80, right hemisphere 39.7
2647 Male, age 75, left hemisphere 39.4
2489 Female, age 72, unknown 37.6
1829 Male, age 74, unknown 37.0
Septal nuclei
nTPM: 37.6
1960 Male, age 74, unknown 42.6
2031 Female, age 72, unknown 39.6
2059 Female, age 85, both hemispheres 37.7
2394 Male, age 61, left hemisphere 36.4
2199 Male, age 80, right hemisphere 36.0
2009 Female, age 91, both hemispheres 35.7
2629 Female, age 94, right hemisphere 35.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.3
Samples: 246

Max nTPM: 66.5
Min nTPM: 21.2
Std nTPM: 6.4
Median nTPM: 37.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 66.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 59.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 53.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 53.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 52.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 51.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 51.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 51.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 51.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 50.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.2
Samples: 246

Max nTPM: 70.5
Min nTPM: 26.4
Std nTPM: 7.8
Median nTPM: 44.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 70.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 68.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 67.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 61.7
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 61.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 60.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 60.9
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 59.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 59.6
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 59.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 59.0
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Brain - Putamen (basal ganglia)
Average nTPM: 40.1
Samples: 205

Max nTPM: 55.1
Min nTPM: 25.8
Std nTPM: 5.6
Median nTPM: 39.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 55.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 54.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 54.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 53.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 52.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 52.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 51.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 51.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 51.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 51.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 51.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 47.0
FF:10164-103B2 76 years, female 47.0
Globus pallidus
Scaled Tags Per Million: 36.6
FF:10161-103A8 76 years, female 44.8
FF:10175-103C4 60 years, female 28.4
Nucleus accumbens
Scaled Tags Per Million: 39.8
FF:10037-101F1 23-56 years, mixed 39.8
Putamen
Scaled Tags Per Million: 46.2
FF:10176-103C5 60 years, female 46.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Caudate
nTPM: 12.0
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.4
Sample A Female 10.4
Sample B Female 12.8
Sample C Male 14.0
Sample D Male 10.7
Putamen
nTPM: 13.8
Samples: 4

Max nTPM: 17.0
Min nTPM: 9.9
Sample A Female 14.0
Sample B Female 9.9
Sample C Male 17.0
Sample D Male 14.3
Septum
nTPM: 13.7
Samples: 4

Max nTPM: 19.1
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 11.8
Sample C Male 19.1
Sample D Male 11.9
Ventral pallidum
nTPM: 14.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 15.7
Sample C Male 19.2
Sample D Male 12.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 46.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 46.4
Samples: 4

Max nTPM: 50.2
Min nTPM: 41.0
Sample A Male 50.2
Sample B Male 47.3
Sample C Female 41.0
Sample D Female 47.0
Septum
nTPM: 42.4
Samples: 4

Max nTPM: 44.0
Min nTPM: 41.3
Sample A Male 41.8
Sample B Male 44.0
Sample C Female 42.3
Sample D Female 41.3
Ventral forebrain
nTPM: 40.3
Samples: 4

Max nTPM: 43.4
Min nTPM: 38.1
Sample A Male 38.7
Sample B Male 43.4
Sample C Female 40.9
Sample D Female 38.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
68341495 Antisense, RP_041207_01_F07, Mouse strain C57BL/6J (56 days, male) 1.9
70919113 Antisense, RP_050712_04_B11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 1.1
68341495 Antisense, RP_041207_01_F07, Mouse strain C57BL/6J (56 days, male) 2.3
70919113 Antisense, RP_050712_04_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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