MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:40.7 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:34.3 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2411 Female, age 72, unknown 43.4
2586 Male, age 75, left hemisphere 41.6
2019 Male, age 18, unknown 41.3
2666 Male, age 74, left hemisphere 40.6
1870 Female, age 42, unknown 39.6
2828 Female, age 72, unknown 39.2
1830 Male, age 51, unknown 39.0
2219 Male, age 76, both hemispheres 38.4
1827 Male, age 72, unknown 38.3
1833 Male, age 53, unknown 38.3
Dorsal raphe nucleus
nTPM: 39.5
2750 Male, age 76, both hemispheres 42.1
2298 Female, age 72, unknown 40.8
2047 Male, age 72, unknown 39.4
1828 Male, age 53, unknown 39.1
2016 Female, age 72, unknown 36.4
Inferior colliculus
nTPM: 36.4
1890 Male, age 53, unknown 37.7
2097 Female, age 72, unknown 37.2
1848 Female, age 42, unknown 36.5
2849 Male, age 72, unknown 34.3
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Pedunculopontine tegmental nucleus
nTPM: 40.2
2334 Male, age 80, both hemispheres 41.0
2338 Male, age 61, both hemispheres 40.6
1921 Female, age 85, both hemispheres 39.0
Periaquaductal grey, anterior
nTPM: 39.9
2502 Female, age 75, unknown 41.2
1795 Male, age 51, unknown 39.4
1947 Male, age 18, unknown 39.2
Periaquaductal grey, dorsal
nTPM: 36.0
1840 Male, age 53, unknown 36.6
2464 Female, age 72, unknown 36.4
1831 Male, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 35.0
Periaquaductal grey, lateral
nTPM: 36.5
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 34.4
Pretectal area
nTPM: 39.3
2007 Male, age 72, unknown 42.4
1816 Male, age 51, unknown 41.8
1815 Male, age 53, unknown 41.1
1817 Female, age 42, unknown 41.1
1944 Female, age 72, unknown 40.1
2667 Female, age 75, unknown 39.0
2224 Female, age 72, unknown 38.3
2407 Male, age 75, both hemispheres 37.8
2273 Male, age 74, both hemispheres 37.6
2825 Male, age 18, unknown 36.7
2316 Male, age 76, right hemisphere 35.9
Red nucleus
nTPM: 40.9
2584 Male, age 75, left hemisphere 42.5
2503 Female, age 72, unknown 41.5
2785 Male, age 18, unknown 41.5
1865 Male, age 51, unknown 41.4
1904 Male, age 53, unknown 41.2
2588 Male, age 74, left hemisphere 41.1
1821 Female, age 72, unknown 40.8
1954 Female, age 42, unknown 40.8
2227 Male, age 72, unknown 40.8
2769 Male, age 72, unknown 40.5
2725 Female, age 75, unknown 40.0
2823 Male, age 76, right hemisphere 38.8
Substantia nigra
nTPM: 42.2
1916 Female, age 42, unknown 46.7
1851 Male, age 51, unknown 45.4
2241 Male, age 72, unknown 45.4
2583 Male, age 75, right hemisphere 42.1
2590 Female, age 75, unknown 41.6
1889 Female, age 72, unknown 41.3
2409 Female, age 72, unknown 40.7
1941 Male, age 53, unknown 40.0
2699 Male, age 18, unknown 39.9
2665 Male, age 74, both hemispheres 39.1
Superior colliculus
nTPM: 38.8
2261 Male, age 18, unknown 41.0
2587 Male, age 74, left hemisphere 40.0
1796 Male, age 53, unknown 39.8
1913 Female, age 42, unknown 39.5
2087 Female, age 72, unknown 39.4
2668 Female, age 75, unknown 38.8
2664 Male, age 75, both hemispheres 38.6
1995 Male, age 72, unknown 38.0
1839 Male, age 51, unknown 36.3
1895 Male, age 76, right hemisphere 36.3
Ventral tegmental area
nTPM: 41.9
2410 Female, age 72, unknown 44.6
1915 Female, age 42, unknown 42.7
2223 Female, age 72, unknown 42.6
2218 Male, age 76, both hemispheres 41.4
1942 Male, age 51, unknown 40.2
2021 Male, age 53, unknown 39.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.7
Samples: 139

Max nTPM: 61.4
Min nTPM: 27.2
Std nTPM: 6.7
Median nTPM: 40.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 61.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 59.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 53.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 50.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 49.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.3
FF:10158-103A5 76 years, female 53.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 22.2
Min nTPM: 15.2
Sample A Female 22.2
Sample B Female 18.6
Sample C Male 18.9
Sample D Male 15.2
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.6
Min nTPM: 13.5
Sample B Female 14.9
Sample C Male 15.6
Sample D Male 13.5
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 27.8
Min nTPM: 14.5
Sample A Female 27.8
Sample B Female 15.8
Sample C Male 24.6
Sample D Male 14.5
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 22.3
Min nTPM: 17.8
Sample A Female 21.1
Sample B Female 17.8
Sample C Male 22.3
Sample D Male 19.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 37.0
Min nTPM: 32.5
Sample A Male 37.0
Sample B Male 32.5
Sample C Female 33.5
Sample D Female 34.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68341495 Antisense, RP_041207_01_F07, Mouse strain C57BL/6J (56 days, male) 1.7
70919113 Antisense, RP_050712_04_B11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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