MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:41.4 nTPM
FANTOM5:70.2 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:109.7 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.4
2411 Female, age 72, unknown 42.6
1870 Female, age 42, unknown 40.4
1833 Male, age 53, unknown 38.7
1830 Male, age 51, unknown 38.0
2019 Male, age 18, unknown 34.4
2828 Female, age 72, unknown 34.3
1827 Male, age 72, unknown 34.1
2586 Male, age 75, left hemisphere 31.8
2666 Male, age 74, left hemisphere 31.6
2219 Male, age 76, both hemispheres 28.0
Dorsal raphe nucleus
nTPM: 32.0
2298 Female, age 72, unknown 33.4
1828 Male, age 53, unknown 33.3
2750 Male, age 76, both hemispheres 32.8
2016 Female, age 72, unknown 31.0
2047 Male, age 72, unknown 29.6
Inferior colliculus
nTPM: 31.4
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 32.3
1890 Male, age 53, unknown 31.1
2849 Male, age 72, unknown 28.3
Median raphe nucleus
nTPM: 28.2
2220 Male, age 76, midline 28.2
Pedunculopontine tegmental nucleus
nTPM: 34.6
2338 Male, age 61, both hemispheres 40.0
2334 Male, age 80, both hemispheres 32.7
1921 Female, age 85, both hemispheres 31.0
Periaquaductal grey, anterior
nTPM: 33.6
1947 Male, age 18, unknown 41.5
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 29.1
2464 Female, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 28.6
1831 Male, age 72, unknown 28.0
1840 Male, age 53, unknown 26.2
Periaquaductal grey, lateral
nTPM: 29.4
2272 Male, age 74, both hemispheres 30.5
2053 Male, age 18, unknown 29.0
2140 Male, age 76, both hemispheres 28.6
Pretectal area
nTPM: 31.4
1944 Female, age 72, unknown 38.6
2667 Female, age 75, unknown 35.2
2273 Male, age 74, both hemispheres 33.9
1817 Female, age 42, unknown 32.9
1815 Male, age 53, unknown 32.4
1816 Male, age 51, unknown 31.0
2825 Male, age 18, unknown 30.5
2007 Male, age 72, unknown 29.4
2224 Female, age 72, unknown 28.4
2407 Male, age 75, both hemispheres 28.2
2316 Male, age 76, right hemisphere 24.6
Red nucleus
nTPM: 40.1
1821 Female, age 72, unknown 49.4
1865 Male, age 51, unknown 49.3
1954 Female, age 42, unknown 45.8
1904 Male, age 53, unknown 42.0
2769 Male, age 72, unknown 41.9
2503 Female, age 72, unknown 41.7
2227 Male, age 72, unknown 39.1
2823 Male, age 76, right hemisphere 38.1
2588 Male, age 74, left hemisphere 37.5
2725 Female, age 75, unknown 34.8
2785 Male, age 18, unknown 34.0
2584 Male, age 75, left hemisphere 27.2
Substantia nigra
nTPM: 36.3
2241 Male, age 72, unknown 39.9
2409 Female, age 72, unknown 39.7
1851 Male, age 51, unknown 38.0
1941 Male, age 53, unknown 37.4
2699 Male, age 18, unknown 37.1
1916 Female, age 42, unknown 36.9
2590 Female, age 75, unknown 35.7
2665 Male, age 74, both hemispheres 34.7
1889 Female, age 72, unknown 32.4
2583 Male, age 75, right hemisphere 30.9
Superior colliculus
nTPM: 33.9
1995 Male, age 72, unknown 39.6
2587 Male, age 74, left hemisphere 37.5
2087 Female, age 72, unknown 36.0
1913 Female, age 42, unknown 35.2
1895 Male, age 76, right hemisphere 34.7
2668 Female, age 75, unknown 34.2
1796 Male, age 53, unknown 33.7
2261 Male, age 18, unknown 31.5
1839 Male, age 51, unknown 30.7
2664 Male, age 75, both hemispheres 26.3
Ventral tegmental area
nTPM: 38.3
2410 Female, age 72, unknown 47.0
1915 Female, age 42, unknown 41.5
1942 Male, age 51, unknown 37.0
2223 Female, age 72, unknown 36.7
2218 Male, age 76, both hemispheres 35.5
2021 Male, age 53, unknown 32.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.4
Samples: 139

Max nTPM: 90.1
Min nTPM: 26.6
Std nTPM: 9.3
Median nTPM: 40.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 90.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 77.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 60.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 55.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 55.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 55.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 55.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 54.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.2
FF:10158-103A5 76 years, female 70.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 44.8
Min nTPM: 22.7
Sample A Female 44.8
Sample B Female 38.0
Sample C Male 37.3
Sample D Male 22.7
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 29.6
Min nTPM: 23.9
Sample B Female 29.6
Sample C Male 23.9
Sample D Male 25.0
Substantia nigra
nTPM: 35.4
Samples: 4

Max nTPM: 42.1
Min nTPM: 28.3
Sample A Female 42.1
Sample B Female 37.6
Sample C Male 28.3
Sample D Male 33.6
Superior colliculi
nTPM: 39.8
Samples: 4

Max nTPM: 48.1
Min nTPM: 33.1
Sample A Female 37.5
Sample B Female 48.1
Sample C Male 40.4
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.7
Samples: 4

Max nTPM: 119.7
Min nTPM: 98.8
Sample A Male 98.8
Sample B Male 111.8
Sample C Female 119.7
Sample D Female 108.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
355886 Antisense, RP_040617_01_F04, Mouse strain C57BL/6J (56 days, male) 3.4
68269036 Antisense, RP_041208_01_E11, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.