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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.4 nTPM
HPA:29.5 nTPM
GTEx:46.4 nTPM
FANTOM5:62.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 29.5
overview
Male, age 65
Small intestine sample 232
nTPM: 32
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 20.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 26.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 39.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 46.4
Samples: 187

Max nTPM: 348.3
Min nTPM: 3.3
Std nTPM: 44.8
Median nTPM: 34.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 348.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 249.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 186.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 158.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 156.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 151.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 141.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 137.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 130.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 129.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 129.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 128.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 121.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 115.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 110.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 105.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 102.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 102.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 98.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 97.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 95.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 94.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 93.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 92.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 89.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 87.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 86.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 82.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 80.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 80.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 75.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 74.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 71.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 71.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 70.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 70.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 68.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 67.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 67.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 67.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 67.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 64.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 63.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 62.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 60.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 58.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 58.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 58.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 57.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 56.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 55.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 55.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 54.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 54.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 51.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 50.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 50.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 49.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 49.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 49.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 49.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 47.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 47.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 47.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 47.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 47.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 47.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 46.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 45.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 44.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 43.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 42.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 42.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 42.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 41.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 41.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 40.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 40.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 39.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 39.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 39.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 39.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 38.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 38.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 37.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 37.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 36.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 36.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 35.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 35.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 35.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 35.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 34.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 34.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 34.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 34.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 34.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 34.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 34.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 33.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 33.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 32.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 32.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 31.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 31.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 30.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 30.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 29.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 29.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 29.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 29.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 28.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 28.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 28.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 28.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 27.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 26.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 26.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 26.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 25.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 25.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 25.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 24.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 23.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 23.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 23.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 23.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 22.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 22.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 21.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 21.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 21.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 21.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 21.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 21.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 20.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 20.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 20.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 19.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 18.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 17.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 16.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 16.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 16.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 16.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 15.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 15.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 14.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 14.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 14.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 13.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 13.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 13.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 12.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 11.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 11.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 10.7
GTEX-1192X-2526-SM-59868 50-59 years, male 9.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 8.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 8.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 8.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 7.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 7.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 7.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 7.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 6.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 6.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 6.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 5.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 5.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 4.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 4.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 4.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 3.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 3.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.3
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 62.9
FF:10024-101D6 15,40,85 years, mixed 62.9

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