HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:69.9 nTPM
HPA:69.9 nTPM
GTEx:67.6 nTPM
FANTOM5:158.8 Scaled Tags Per Million
Pig:35.3 nTPM
Mouse:54.9 nTPM
Allen mouse:3.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038782Antibody HPA038783
Glial cells LowNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 69.9
Sample id Sample description nTPM
Hippocampus
nTPM: 56.6
1898 Male, age 80, left hemisphere 77.7
2148 Female, age 91, left hemisphere 60.0
1855 Male, age 76, left hemisphere 56.9
2621 Female, age 67, right hemisphere 55.6
2529 Female, age 94, left hemisphere 49.8
1911 Female, age 85, right hemisphere 39.3
Dentate gyrus
nTPM: 58.6
1927 Female, age 91, both hemispheres 69.3
2530 Female, age 94, left hemisphere 62.8
2528 Male, age 74, both hemispheres 61.3
2010 Male, age 76, both hemispheres 53.4
2531 Female, age 67, both hemispheres 53.0
2246 Female, age 85, both hemispheres 51.7
Entorhinal gyrus
nTPM: 63.1
2764 Male, age 80, right hemisphere 76.5
2613 Female, age 94, left hemisphere 69.9
1787 Male, age 76, left hemisphere 61.0
1938 Female, age 85, left hemisphere 59.5
2686 Male, age 75, right hemisphere 56.9
2117 Female, age 91, right hemisphere 54.7
Hippocampus, CA1
nTPM: 56.6
2749 Male, age 80, left hemisphere 72.8
1873 Female, age 85, both hemispheres 59.5
2527 Male, age 74, both hemispheres 55.1
2045 Male, age 76, both hemispheres 52.1
2082 Female, age 91, right hemisphere 43.3
Hippocampus, CA2
nTPM: 58.9
1963 Male, age 80, left hemisphere 77.9
1892 Male, age 76, both hemispheres 77.0
2437 Female, age 94, left hemisphere 63.3
2249 Male, age 74, both hemispheres 47.0
1940 Female, age 85, left hemisphere 45.1
2113 Female, age 91, right hemisphere 43.4
Hippocampus, CA3
nTPM: 55.7
2620 Female, age 94, left hemisphere 72.1
2861 Female, age 67, both hemispheres 59.4
1867 Male, age 76, both hemispheres 56.9
1891 Female, age 85, both hemispheres 51.7
2137 Male, age 80, left hemisphere 48.5
2436 Male, age 74, both hemispheres 45.3
Parahippocampal cortex
nTPM: 58.1
1990 Female, age 91, right hemisphere 70.0
1850 Male, age 80, both hemispheres 69.5
2693 Female, age 94, both hemispheres 61.4
2532 Female, age 72, left hemisphere 60.2
2692 Male, age 74, both hemispheres 59.4
2245 Female, age 91, both hemispheres 57.1
1933 Female, age 85, both hemispheres 55.9
2622 Female, age 67, right hemisphere 54.0
2250 Female, age 67, right hemisphere 52.9
2018 Male, age 76, both hemispheres 40.7
Perirhinal gyrus
nTPM: 69.9
1847 Female, age 91, left hemisphere 80.7
1794 Male, age 80, right hemisphere 78.4
2521 Female, age 94, right hemisphere 70.0
1841 Female, age 85, right hemisphere 62.7
2848 Male, age 76, right hemisphere 57.8
Subiculum
nTPM: 54.5
1977 Female, age 85, both hemispheres 63.0
2619 Male, age 74, both hemispheres 60.5
2438 Female, age 94, left hemisphere 59.7
1901 Male, age 80, both hemispheres 56.1
2729 Female, age 91, right hemisphere 53.3
2042 Male, age 76, both hemispheres 34.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 67.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 67.6
Samples: 197

Max nTPM: 144.4
Min nTPM: 17.8
Std nTPM: 20.5
Median nTPM: 61.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 144.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 127.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 125.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 125.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 118.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 118.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 117.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 115.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 115.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 114.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 110.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 158.8
FF:10169-103B7 60 years, female 201.9
FF:10153-102I9 76 years, female 115.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.7
Samples: 4

Max nTPM: 36.6
Min nTPM: 20.3
Sample A Female 36.6
Sample B Female 34.0
Sample C Male 27.9
Sample D Male 20.3
Entorhinal cortex
nTPM: 35.3
Samples: 4

Max nTPM: 42.9
Min nTPM: 29.0
Sample A Female 34.0
Sample B Female 35.3
Sample C Male 42.9
Sample D Male 29.0
Subiculum
nTPM: 28.9
Samples: 4

Max nTPM: 37.5
Min nTPM: 22.4
Sample A Female 37.5
Sample B Female 26.3
Sample C Male 29.5
Sample D Male 22.4
Ventral hippocampus
nTPM: 30.9
Samples: 4

Max nTPM: 42.2
Min nTPM: 22.8
Sample A Female 29.0
Sample B Female 22.8
Sample C Male 42.2
Sample D Male 29.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 54.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.0
Samples: 4

Max nTPM: 61.8
Min nTPM: 51.0
Sample A Male 51.0
Sample B Male 52.9
Sample C Female 54.1
Sample D Female 61.8
Hippocampal formation
nTPM: 45.8
Samples: 4

Max nTPM: 47.8
Min nTPM: 43.3
Sample A Male 47.8
Sample B Male 43.3
Sample C Female 46.6
Sample D Female 45.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
68637898 Antisense, RP_050126_01_H02, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.