MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.9 nTPM
HPA:77.9 nTPM
GTEx:79.5 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:33.6 nTPM
Mouse:69.4 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.6
2019 Male, age 18, unknown 88.6
2586 Male, age 75, left hemisphere 87.9
2411 Female, age 72, unknown 82.7
1827 Male, age 72, unknown 81.3
2666 Male, age 74, left hemisphere 77.1
2828 Female, age 72, unknown 65.3
2219 Male, age 76, both hemispheres 65.0
1833 Male, age 53, unknown 63.8
1830 Male, age 51, unknown 62.7
1870 Female, age 42, unknown 61.2
Dorsal raphe nucleus
nTPM: 58.6
2298 Female, age 72, unknown 64.2
1828 Male, age 53, unknown 61.5
2047 Male, age 72, unknown 60.9
2750 Male, age 76, both hemispheres 59.4
2016 Female, age 72, unknown 46.9
Inferior colliculus
nTPM: 65.6
1848 Female, age 42, unknown 73.2
2849 Male, age 72, unknown 69.0
2097 Female, age 72, unknown 62.2
1890 Male, age 53, unknown 58.1
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Pedunculopontine tegmental nucleus
nTPM: 64.6
2334 Male, age 80, both hemispheres 70.5
1921 Female, age 85, both hemispheres 69.9
2338 Male, age 61, both hemispheres 53.4
Periaquaductal grey, anterior
nTPM: 72.6
1947 Male, age 18, unknown 76.2
1795 Male, age 51, unknown 72.5
2502 Female, age 75, unknown 69.2
Periaquaductal grey, dorsal
nTPM: 55.0
1840 Male, age 53, unknown 65.7
2464 Female, age 72, unknown 58.6
1831 Male, age 72, unknown 53.1
2850 Male, age 76, both hemispheres 42.4
Periaquaductal grey, lateral
nTPM: 52.5
2053 Male, age 18, unknown 58.0
2272 Male, age 74, both hemispheres 52.0
2140 Male, age 76, both hemispheres 47.7
Pretectal area
nTPM: 77.9
2007 Male, age 72, unknown 109.7
1944 Female, age 72, unknown 105.1
1816 Male, age 51, unknown 103.8
1817 Female, age 42, unknown 103.3
1815 Male, age 53, unknown 80.9
2667 Female, age 75, unknown 72.0
2407 Male, age 75, both hemispheres 66.7
2224 Female, age 72, unknown 60.6
2825 Male, age 18, unknown 58.1
2273 Male, age 74, both hemispheres 50.5
2316 Male, age 76, right hemisphere 46.3
Red nucleus
nTPM: 68.7
2588 Male, age 74, left hemisphere 83.5
2785 Male, age 18, unknown 82.5
2584 Male, age 75, left hemisphere 81.1
1821 Female, age 72, unknown 76.8
2503 Female, age 72, unknown 67.2
1954 Female, age 42, unknown 65.4
2725 Female, age 75, unknown 64.5
2227 Male, age 72, unknown 63.5
1865 Male, age 51, unknown 63.1
2769 Male, age 72, unknown 62.5
1904 Male, age 53, unknown 58.0
2823 Male, age 76, right hemisphere 55.9
Substantia nigra
nTPM: 73.1
1941 Male, age 53, unknown 92.7
1889 Female, age 72, unknown 92.0
2583 Male, age 75, right hemisphere 80.2
2665 Male, age 74, both hemispheres 74.0
2590 Female, age 75, unknown 72.7
1916 Female, age 42, unknown 72.0
1851 Male, age 51, unknown 69.4
2409 Female, age 72, unknown 66.5
2241 Male, age 72, unknown 63.2
2699 Male, age 18, unknown 48.6
Superior colliculus
nTPM: 70.5
2087 Female, age 72, unknown 87.3
2668 Female, age 75, unknown 79.6
2261 Male, age 18, unknown 77.3
1895 Male, age 76, right hemisphere 75.6
2664 Male, age 75, both hemispheres 74.1
1796 Male, age 53, unknown 73.0
1839 Male, age 51, unknown 68.0
2587 Male, age 74, left hemisphere 63.1
1913 Female, age 42, unknown 55.4
1995 Male, age 72, unknown 52.1
Ventral tegmental area
nTPM: 63.2
2410 Female, age 72, unknown 83.9
1915 Female, age 42, unknown 66.3
2218 Male, age 76, both hemispheres 64.8
1942 Male, age 51, unknown 59.9
2223 Female, age 72, unknown 54.2
2021 Male, age 53, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.5
Samples: 139

Max nTPM: 258.4
Min nTPM: 44.3
Std nTPM: 26.5
Median nTPM: 76.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 258.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 205.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 153.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 134.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 127.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 122.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 122.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 118.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 115.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 106.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 105.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.3
FF:10158-103A5 76 years, female 90.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.6
Pig sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 57.7
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 21.7
Sample C Male 57.7
Sample D Male 29.0
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 27.1
Min nTPM: 18.9
Sample B Female 23.0
Sample C Male 27.1
Sample D Male 18.9
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 36.5
Min nTPM: 16.4
Sample A Female 36.5
Sample B Female 22.8
Sample C Male 28.9
Sample D Male 16.4
Superior colliculi
nTPM: 33.6
Samples: 4

Max nTPM: 49.9
Min nTPM: 21.1
Sample A Female 31.6
Sample B Female 21.1
Sample C Male 49.9
Sample D Male 31.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 71.7
Min nTPM: 65.1
Sample A Male 65.1
Sample B Male 69.5
Sample C Female 71.7
Sample D Female 71.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
68637898 Antisense, RP_050126_01_H02, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.