BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:56.6 nTPM
FANTOM5:144.5 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:104.0 nTPM
Allen mouse:3.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007893
Glial cells Not detected
Neuronal cells Medium

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.8
1854 Male, age 80, left hemisphere 63.8
1857 Female, age 85, left hemisphere 59.0
2481 Female, age 94, left hemisphere 58.3
2288 Male, age 75, left hemisphere 51.4
1781 Male, age 74, unknown 48.1
2290 Female, age 72, unknown 48.0
2289 Male, age 61, right hemisphere 47.3
2846 Female, age 79, unknown 46.6
Claustrum
nTPM: 45.6
2198 Male, age 80, both hemispheres 52.7
1956 Male, age 74, unknown 47.9
2645 Female, age 72, unknown 47.1
2284 Female, age 91, both hemispheres 46.8
2196 Female, age 79, unknown 46.5
2568 Male, age 61, both hemispheres 43.4
2392 Female, age 94, both hemispheres 42.8
2292 Female, age 85, both hemispheres 41.5
2491 Male, age 75, both hemispheres 41.5
Globus pallidus, externus
nTPM: 42.6
1996 Male, age 80, right hemisphere 48.7
2395 Male, age 75, both hemispheres 44.1
2772 Female, age 79, unknown 43.3
2646 Male, age 61, right hemisphere 40.4
2567 Female, age 72, unknown 36.6
Globus pallidus, internus
nTPM: 45.5
2483 Female, age 94, right hemisphere 53.0
2287 Male, age 75, right hemisphere 48.9
1818 Male, age 74, unknown 47.2
2778 Female, age 91, both hemispheres 46.0
2037 Male, age 80, right hemisphere 44.9
2111 Female, age 85, right hemisphere 40.4
2566 Female, age 72, unknown 38.4
Nucleus accumbens
nTPM: 48.8
1806 Female, age 85, left hemisphere 56.0
2286 Male, age 75, left hemisphere 52.9
2824 Male, age 61, right hemisphere 50.4
1856 Female, age 91, right hemisphere 49.2
2391 Female, age 94, left hemisphere 47.5
1783 Male, age 74, unknown 47.1
2698 Female, age 72, unknown 46.4
2732 Male, age 80, right hemisphere 41.1
Nucleus basalis of Meynert
nTPM: 45.8
2393 Male, age 80, right hemisphere 51.8
2484 Female, age 94, left hemisphere 45.4
2821 Male, age 75, both hemispheres 43.5
2569 Male, age 61, both hemispheres 42.4
Nucleus of the diagonal band
nTPM: 52.1
1812 Female, age 91, both hemispheres 56.2
2775 Male, age 80, right hemisphere 55.7
2029 Male, age 61, right hemisphere 55.0
2195 Female, age 85, both hemispheres 54.5
1979 Male, age 74, unknown 39.3
Olfactory tubercle
nTPM: 53.9
1846 Male, age 80, right hemisphere 60.5
2856 Male, age 75, right hemisphere 55.0
1998 Female, age 91, both hemispheres 53.1
2487 Female, age 94, left hemisphere 47.0
Putamen
nTPM: 49.0
2482 Female, age 94, left hemisphere 58.4
1838 Male, age 80, right hemisphere 52.8
1937 Female, age 91, right hemisphere 50.1
2647 Male, age 75, left hemisphere 47.2
1829 Male, age 74, unknown 46.7
2466 Female, age 79, unknown 45.2
2489 Female, age 72, unknown 42.6
Septal nuclei
nTPM: 48.7
1960 Male, age 74, unknown 57.1
2629 Female, age 94, right hemisphere 56.0
2031 Female, age 72, unknown 53.3
2009 Female, age 91, both hemispheres 50.6
2059 Female, age 85, both hemispheres 46.6
2394 Male, age 61, left hemisphere 39.0
2199 Male, age 80, right hemisphere 38.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 56.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.6
Samples: 246

Max nTPM: 224.5
Min nTPM: 22.7
Std nTPM: 17.9
Median nTPM: 53.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 224.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 121.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 114.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 98.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 98.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 96.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 96.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 93.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 89.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 87.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 86.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 52.5
Samples: 246

Max nTPM: 153.2
Min nTPM: 27.7
Std nTPM: 13.9
Median nTPM: 50.5
GTEX-1GN1U-0011-R6a-SM-CKZNO 50-59 years, female 153.2
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 100.0
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 95.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 95.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.4
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 87.8
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 85.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 84.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 83.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 82.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 78.0
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Brain - Putamen (basal ganglia)
Average nTPM: 54.2
Samples: 205

Max nTPM: 129.1
Min nTPM: 25.9
Std nTPM: 14.5
Median nTPM: 50.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 129.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 109.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 99.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 96.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 91.9
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 90.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 90.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 88.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 88.0
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 86.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 84.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 118.4
FF:10164-103B2 76 years, female 118.4
Globus pallidus
Scaled Tags Per Million: 70.3
FF:10161-103A8 76 years, female 77.5
FF:10175-103C4 60 years, female 63.1
Nucleus accumbens
Scaled Tags Per Million: 144.5
FF:10037-101F1 23-56 years, mixed 144.5
Putamen
Scaled Tags Per Million: 108.6
FF:10176-103C5 60 years, female 108.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.6
Pig sample Sample description nTPM
Caudate
nTPM: 38.7
Samples: 4

Max nTPM: 44.3
Min nTPM: 36.0
Sample A Female 36.3
Sample B Female 36.0
Sample C Male 44.3
Sample D Male 38.2
Putamen
nTPM: 42.5
Samples: 4

Max nTPM: 53.3
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 38.2
Sample C Male 53.3
Sample D Male 41.7
Septum
nTPM: 42.6
Samples: 4

Max nTPM: 55.1
Min nTPM: 37.1
Sample A Female 39.4
Sample B Female 37.1
Sample C Male 55.1
Sample D Male 38.9
Ventral pallidum
nTPM: 41.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 37.4
Sample A Female 37.4
Sample B Female 40.8
Sample C Male 47.4
Sample D Male 39.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 104.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 83.1
Samples: 4

Max nTPM: 89.3
Min nTPM: 76.7
Sample A Male 80.4
Sample B Male 76.7
Sample C Female 85.9
Sample D Female 89.3
Septum
nTPM: 104.0
Samples: 4

Max nTPM: 113.3
Min nTPM: 97.5
Sample A Male 97.5
Sample B Male 113.3
Sample C Female 103.3
Sample D Female 102.0
Ventral forebrain
nTPM: 89.4
Samples: 4

Max nTPM: 91.7
Min nTPM: 88.1
Sample A Male 88.8
Sample B Male 88.1
Sample C Female 91.7
Sample D Female 88.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
69102359 Antisense, RP_050316_01_H05, Mouse strain C57BL/6J (56 days, male) 3.2
Pallidum
Expression energy: 3.3
69102359 Antisense, RP_050316_01_H05, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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