MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:26.2 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:26.3 nTPM
Mouse:50.4 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.4
2586 Male, age 75, left hemisphere 26.9
2019 Male, age 18, unknown 23.3
2828 Female, age 72, unknown 23.3
1827 Male, age 72, unknown 23.0
2411 Female, age 72, unknown 22.2
1833 Male, age 53, unknown 21.8
1870 Female, age 42, unknown 21.7
2219 Male, age 76, both hemispheres 21.7
1830 Male, age 51, unknown 20.9
2666 Male, age 74, left hemisphere 19.5
Dorsal raphe nucleus
nTPM: 22.1
2298 Female, age 72, unknown 23.9
2750 Male, age 76, both hemispheres 22.3
2047 Male, age 72, unknown 21.8
2016 Female, age 72, unknown 21.2
1828 Male, age 53, unknown 21.1
Inferior colliculus
nTPM: 21.6
2097 Female, age 72, unknown 23.6
1890 Male, age 53, unknown 21.5
1848 Female, age 42, unknown 21.2
2849 Male, age 72, unknown 20.0
Median raphe nucleus
nTPM: 21.7
2220 Male, age 76, midline 21.7
Pedunculopontine tegmental nucleus
nTPM: 20.2
1921 Female, age 85, both hemispheres 21.5
2334 Male, age 80, both hemispheres 20.9
2338 Male, age 61, both hemispheres 18.2
Periaquaductal grey, anterior
nTPM: 24.9
1795 Male, age 51, unknown 25.5
2502 Female, age 75, unknown 25.5
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 20.3
1840 Male, age 53, unknown 21.6
2464 Female, age 72, unknown 21.1
1831 Male, age 72, unknown 20.1
2850 Male, age 76, both hemispheres 18.6
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 21.9
2272 Male, age 74, both hemispheres 21.6
2140 Male, age 76, both hemispheres 21.3
Pretectal area
nTPM: 22.5
1944 Female, age 72, unknown 24.0
2007 Male, age 72, unknown 23.9
1816 Male, age 51, unknown 23.4
2407 Male, age 75, both hemispheres 22.6
1817 Female, age 42, unknown 22.4
2224 Female, age 72, unknown 22.3
2667 Female, age 75, unknown 22.3
2273 Male, age 74, both hemispheres 22.2
2825 Male, age 18, unknown 21.5
1815 Male, age 53, unknown 21.2
2316 Male, age 76, right hemisphere 21.1
Red nucleus
nTPM: 22.3
2785 Male, age 18, unknown 25.7
2584 Male, age 75, left hemisphere 24.8
2503 Female, age 72, unknown 23.7
2227 Male, age 72, unknown 23.0
2769 Male, age 72, unknown 22.7
2725 Female, age 75, unknown 22.6
1904 Male, age 53, unknown 22.4
2588 Male, age 74, left hemisphere 21.7
1821 Female, age 72, unknown 20.4
1865 Male, age 51, unknown 20.2
2823 Male, age 76, right hemisphere 20.2
1954 Female, age 42, unknown 19.9
Substantia nigra
nTPM: 21.5
1916 Female, age 42, unknown 24.1
2409 Female, age 72, unknown 24.0
1889 Female, age 72, unknown 22.9
2583 Male, age 75, right hemisphere 22.3
1851 Male, age 51, unknown 21.9
2665 Male, age 74, both hemispheres 20.9
2590 Female, age 75, unknown 20.5
1941 Male, age 53, unknown 20.2
2241 Male, age 72, unknown 19.5
2699 Male, age 18, unknown 18.5
Superior colliculus
nTPM: 21.9
1796 Male, age 53, unknown 24.1
2664 Male, age 75, both hemispheres 24.0
2261 Male, age 18, unknown 22.9
1995 Male, age 72, unknown 22.6
1839 Male, age 51, unknown 22.4
2087 Female, age 72, unknown 22.0
2668 Female, age 75, unknown 21.9
2587 Male, age 74, left hemisphere 20.4
1913 Female, age 42, unknown 20.3
1895 Male, age 76, right hemisphere 18.2
Ventral tegmental area
nTPM: 21.2
2410 Female, age 72, unknown 22.0
1942 Male, age 51, unknown 21.9
1915 Female, age 42, unknown 21.7
2021 Male, age 53, unknown 21.1
2218 Male, age 76, both hemispheres 20.6
2223 Female, age 72, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 139

Max nTPM: 56.6
Min nTPM: 9.5
Std nTPM: 8.6
Median nTPM: 25.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 55.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 50.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 47.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 43.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 43.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 42.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 40.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 40.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 40.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.1
FF:10158-103A5 76 years, female 16.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.3
Pig sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 32.1
Min nTPM: 20.2
Sample A Female 25.3
Sample B Female 25.3
Sample C Male 32.1
Sample D Male 20.2
Periaqueductal gray
nTPM: 19.7
Samples: 3

Max nTPM: 23.6
Min nTPM: 15.3
Sample B Female 20.3
Sample C Male 23.6
Sample D Male 15.3
Substantia nigra
nTPM: 24.3
Samples: 4

Max nTPM: 34.4
Min nTPM: 16.4
Sample A Female 34.4
Sample B Female 21.0
Sample C Male 25.2
Sample D Male 16.4
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 34.6
Min nTPM: 20.2
Sample A Female 34.6
Sample B Female 24.6
Sample C Male 25.9
Sample D Male 20.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.4
Samples: 4

Max nTPM: 56.4
Min nTPM: 43.6
Sample A Male 56.4
Sample B Male 48.9
Sample C Female 43.6
Sample D Female 52.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71832850 Antisense, RP_051005_03_G07, Mouse strain C57BL/6J (56 days, male) 1.2
70919256 Antisense, RP_050713_01_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.