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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:238.0 nTPM
HPA:238.0 nTPM
GTEx:307.8 nTPM
FANTOM5:74.5 Scaled Tags Per Million
Mouse:86.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 238.0
Sample id Sample description nTPM
Amygdala
nTPM: 225.3
2695 Female, age 67, right hemisphere 252.5
1987 Female, age 91, left hemisphere 226.8
2517 Female, age 94, left hemisphere 223.7
2814 Male, age 76, right hemisphere 214.8
2514 Male, age 75, right hemisphere 208.7
Basal amygdala
nTPM: 202.9
2609 Male, age 75, right hemisphere 269.8
2827 Female, age 67, right hemisphere 201.3
2110 Male, age 80, left hemisphere 197.0
2243 Female, age 91, right hemisphere 191.7
1955 Male, age 76, both hemispheres 182.6
2685 Female, age 94, left hemisphere 175.1
Central amygdala
nTPM: 238.0
2515 Male, age 75, right hemisphere 315.1
1905 Male, age 76, both hemispheres 244.9
2826 Female, age 94, left hemisphere 244.7
2239 Male, age 80, left hemisphere 208.4
2701 Female, age 91, right hemisphere 176.6
Corticomedial amygdala
nTPM: 198.1
2428 Male, age 75, right hemisphere 266.6
2535 Female, age 67, right hemisphere 204.0
2829 Male, age 80, left hemisphere 192.7
2242 Female, age 91, right hemisphere 192.1
2429 Female, age 94, left hemisphere 174.6
2240 Male, age 76, both hemispheres 158.5
Lateral amygdala
nTPM: 235.2
2516 Male, age 75, right hemisphere 288.7
2256 Male, age 80, left hemisphere 265.1
2830 Female, age 67, right hemisphere 243.0
2534 Female, age 94, left hemisphere 211.7
2255 Female, age 91, right hemisphere 208.0
1883 Male, age 76, both hemispheres 194.6
Stria terminalis, bed nucleus
nTPM: 167.0
2201 Male, age 74, unknown 176.8
1974 Female, age 91, both hemispheres 163.1
2486 Female, age 94, both hemispheres 161.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 307.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 307.8
Samples: 152

Max nTPM: 825.0
Min nTPM: 19.3
Std nTPM: 154.2
Median nTPM: 270.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 825.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 819.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 801.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 730.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 624.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 612.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 606.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 603.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 579.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 576.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 561.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 556.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 550.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 548.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 548.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 537.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 509.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 507.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 505.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 490.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 480.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 476.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 473.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 467.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 464.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 461.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 457.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 454.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 453.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 446.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 436.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 433.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 418.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 415.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 406.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 402.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 398.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 397.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 397.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 395.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 386.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 383.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 367.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 356.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 353.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 352.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 352.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 343.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 341.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 339.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 338.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 334.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 334.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 332.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 328.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 325.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 323.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 321.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 319.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 316.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 314.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 313.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 308.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 306.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 297.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 294.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 287.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 287.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 286.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 285.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 285.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 282.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 278.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 276.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 274.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 271.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 268.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 267.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 265.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 265.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 264.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 263.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 260.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 259.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 248.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 246.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 245.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 244.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 243.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 243.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 240.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 240.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 238.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 233.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 233.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 231.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 230.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 229.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 226.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 222.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 218.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 217.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 214.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 209.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 209.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 204.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 204.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 204.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 203.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 201.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 199.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 198.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 192.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 188.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 188.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 186.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 184.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 184.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 183.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 181.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 179.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 175.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 170.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 170.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 170.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 167.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 165.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 161.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 161.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 160.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 159.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 156.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 155.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 148.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 146.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 145.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 141.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 134.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 126.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 126.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 126.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 123.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 118.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 113.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 106.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 92.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 78.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 19.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 74.5
FF:10151-102I7 76 years, female 74.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 86.8
Samples: 4

Max nTPM: 110.3
Min nTPM: 78.2
Sample A Male 78.2
Sample B Male 78.4
Sample C Female 110.3
Sample D Female 80.3

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